SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78105

Length: 366 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene78105
CGTCGTGACCTTGGCTGTCACTCAGTATCGTATATGGGCAGCTTCAGAGAGGAAATGTTGTGGTTACAGGCAGGAAATTTGCTTTTGTTAGAATGCTGGAGGGCATTCAGTAGTACAAGATAACCCATTTGCCTTTAGTGCCATCCATTGTGATTACTGTTGCAAAGGAGAAAATTGTGGCACGATATGATCTGTGTTCTTTGAAGGAAGTTATCACTGGAGCAGCATCCTTGGGCAAAGATATCATGGAGGGATTTGCGAAAAGATTTTACAAGCTACAATGATTCAGGTGTATATCTATATCCATTTTCTCCTATGCATCATATGTGAAACGTAGGTTGTGGAATTGAATGTTGACCATACTTA

Ace file of the UniGene sp_v2.0_unigene78105

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] sp\|Q9M0X9.1\|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 emb\|CAB81058.1\| 4-coumarate--CoA ligase-like protein [Arabidopsis tha	-	-	4.0e-12	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	amp dependent	-	-	1.07164e-29	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNP4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 181 aas, your sequence is shorter than subject: 94 - 540

Fln protein: S*PWLSLSIVYGQLQRGNVVVTGRKFAFVRMLEGIQ*YKITHLPLVPSIVITVAKEKIVARYDLCSLKEVITGAASLGKDIMEGFAKRFYKLQ*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATCGTATATGGGCAGCTTCAGAGAGGAAATGTTGTGGTTACAGGCAGGAAATTTGCTTTTGTTAGAATGCTGGAGGGCATTCAGTAGTACAAGATAACCCATTTGCCTTTAGTGCCATCCATTGTGATTACTGTTGCAAAGGAGAAAATTGTGGCACGATATGATCTGTGTTCTTTGAAGGAAGTTATCACTGGAGCAGCATCCTTGGGCAAAGATATCATGGAGGGATTTGCGAAAAGATTTTACAAGCTACAATGATTCAGGTGTATATCTATATCCATTTTCTCCTATGCATCATATGTGAAACGTAGGTTGTGGAATTGAATGTTGACCATACTTA

Fln Alignment:

AllPineV4_rep_c119317___IVYGQLQRGNVVVTGRKFAFVRMLEGIQ*YKITHLPLVPSIVITVAKEKIVARYDLCSLKEVITGAASLGKDIMEGFAKR
B8LNP4_______________IVYGQLQRGNAVVSMGKFTFVRMLEAIQEYKITHLPLVPPIVIAVAKENIVARYDLSSLKKVMSGAAPLGKDIMEECAKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain