SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77819

Length: 339 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene77819
TTGATCCCACAGATTGATGACCTTCTGGACCAAATCAATGGAGCAAAATATTTCAGCAAGATCGACTTGAAGGAACTAGGTACCAATCGAACCCTCTGATGTGTGGAAGATTTCCTTCAAAGCCAAGGAGGGCCTTTTCGAATGGTTGGTTATGCCTTTCGGGTTGACGAATGCTCCTGCGACCTTCATGAGGCTCATGGATGACATCTTACGACCATTCACCAACTCATTTGTAGTGGTATACTTGGATGACATCCTGATCTTCAGCCAGAGTTCGGAAGATCACCTCCACCACATCCGACAAGTTCTCCAAACTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene77819 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA	-	-	4.0e-34	90%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	47%
Blast2go	reverse transcriptase	-	-	4.92852e-35	82%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 85 aas, putative chimeric sequence, your sequence is shorter than subject: 33 - 142

Fln protein: LIPQIDDLLDQINGAKYFSKIDLKELGTNRTL*

Protein Length: 34

Fln nts: TTGATCCCACAGATTGATGACCTTCTGGACCAAATCAATGGAGCAAAATATTTCAGCAAGATCGACTTGAAGGAACTAGGTACCAATCGAACCCTCTGA___TGTGTGGAAGATTTCCTTCAAAGCCAAGGAGGGCCTTTTCGAATGGTTGGTTATGCCTTTCGGGTTGACGAATGCTCCTGCGACCTTCATGAGGCTCATGGATGACATCTTACGACCATTCACCAACTCATTTGTAGTGGTATACTTGGATGACATCCTGATCTTCAGCCAGAGTTCGGAAGATCACCTCCACCACATCCGACAAGTTCTCCAAACTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_rep_c117868___IPQIDDLLDQINGAKYFSKIDLK
P31843_______________IPRVDDLFDRLAQATWFTKLDLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain