SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77411

Length: 428 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene77411
CGTCGTGACCTTGGCTGTCACTCATATATACCCGACACTAACTTTGTACTTCATCATGTAGACGAAAACCAAAAGGAAGACATCTTGTGTAGCCACAGTGAGAAACTTGCCATTGCTTTTGGACTTATAAACACAAGCCCCGGGACAGCTATCCGAATAACCAAGAACCTTCGTGTGTGTGGTGATTGCCATAGAGCTGCCAAGTTCATCTGCAAGATTGTTGAGCGAGAAATTATTTTAAGAGATGCTTATCGCTTCCATCATTTTAAGGATGGAGTGTGCTCTTGTGGGGATTATTGGTGATACTAACTTGGAAAGCAAACAAACTGAAATTTTTCTATCAACGAACTGATTGCTTCTACCTTTATCTGCTAGCTAGGAATTAGTTGGTATATATGTTTCAGCACTGGTTGGTATTCAAACATTAA

Ace file of the UniGene sp_v2.0_unigene77411 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q7Y211.2\|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb\|AEE79654.1\| pentatricopeptide repeat-containing protein [Ara	-	-	4.0e-36	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	pentatricopeptide repeat protein	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 101 - 246

Fln protein: RRDLGCHSYIPDTNFVLHHVDENQKEDILCSHSEKLAIAFGLINTSPGTAIRITKNLRVCGDCHRAAKFICKIVEREIILRDAYRFHHFKDGVCSCGDYW*

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATATACCCGACACTAACTTTGTACTTCATCATGTAGACGAAAACCAAAAGGAAGACATCTTGTGTAGCCACAGTGAGAAACTTGCCATTGCTTTTGGACTTATAAACACAAGCCCCGGGACAGCTATCCGAATAACCAAGAACCTTCGTGTGTGTGGTGATTGCCATAGAGCTGCCAAGTTCATCTGCAAGATTGTTGAGCGAGAAATTATTTTAAGAGATGCTTATCGCTTCCATCATTTTAAGGATGGAGTGTGCTCTTGTGGGGATTATTGGTGA___TACTAACTTGGAAAGCAAACAAACTGAAATTTTTCTATCAACGAACTGATTGCTTCTACCTTTATCTGCTAGCTAGGAATTAGTTGGTATATATGTTTCAGCACTGGTTGGTATTCAAACATTAA

Fln Alignment:

AllPineV4_rep_c116146___RDLGCHSYIPDTNFVLHHVDENQKEDILCSHSEKLAIAFGLINTSPGTAIRITKNLRVCGDCHRAAKFICKIVEREIILRDAYRFHHFKDGVCSCGDYW
D5AAE0_______________RQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
255		66	33		0.997452
258		66		33	0.997452
261	66	33			0.997452
262	33		66		0.997452
265		33		66	0.997452
267	33			66	0.997452
268	33			66	0.997452
272		33		66	0.997452
275			33	66	0.997452
276	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain