SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77294

Length: 370 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene77294
TGGGTGCGTCGTGACTTTGGCTGCAGTCAACAATGCTTTCGGTCATGCTTTCAGAGATTATGAAAAGGAAAGTGTGAGACGGGCTGGTGTGCAAGAGTTTTACAGATTGAATCACGTCAACCAGTCTTATGAATATGTATTAAGCAAGCGTGAACAGTATGGTAAGCTTGACAAAACTGTTATGAGCATCTGGGAATGCTGTGGACTCTTAAACGAGTTTGTTGATGAGAGTGACCCTGACCTTGATGAACCTCAAATAGAACACCTGCTACAAACAGCAGAGGCTATTCGTAAAGATTACCCAAATGAAGATTGGCTTCATTTGACTGGCCTAATCCATGATTTGGGCAAGGTACTACTTCATCCTAAC

Ace file of the UniGene sp_v2.0_unigene77294

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Myo-inositol oxygenase n=1 Tax=Eucalyptus grandis RepID=B3VDZ0_EUCGR	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	myo-inositol oxygenase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol oxygenase.	EC:1.13.99.1	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	88%
Blast2go	Inositol phosphate metabolism	00562		0.0	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	syncytium formation	GO:0006949	Biological Process	0.0	88%
Blast2go	inositol oxygenase activity	GO:0050113	Molecular Function	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU49

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 123 - 316

Fln protein: GCVVTLAAVNNAFGHAFRDYEKESVRRAGVQEFYRLNHVNQSYEYVLSKREQYGKLDKTVMSIWECCGLLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPN

Protein Length: 124

Fln nts: TGGGTGCGTCGTGACTTTGGCTGCAGTCAACAATGCTTTCGGTCATGCTTTCAGAGATTATGAAAAGGAAAGTGTGAGACGGGCTGGTGTGCAAGAGTTTTACAGATTGAATCACGTCAACCAGTCTTATGAATATGTATTAAGCAAGCGTGAACAGTATGGTAAGCTTGACAAAACTGTTATGAGCATCTGGGAATGCTGTGGACTCTTAAACGAGTTTGTTGATGAGAGTGACCCTGACCTTGATGAACCTCAAATAGAACACCTGCTACAAACAGCAGAGGCTATTCGTAAAGATTACCCAAATGAAGATTGGCTTCATTTGACTGGCCTAATCCATGATTTGGGCAAGGTACTACTTCATCCTAAC

Fln Alignment:

AllPineV4_rep_c115500___NNAFGHAFRDYEKESVRRAGVQEFYRLNHVNQSYEYVLSKREQYGKLDKTVMSIWECCGLLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPN
A9NU49_______________SNAFGHSFRDYDKESERRAGVQEFYRINHINQTYEYVLSKREHYGKLDKAVMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
116		60		40	1.0
205	40		60		1.0
305		66	33		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain