SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77064

Length: 630 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene77064

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mutant Niemann-Pick C1 [Felis catus]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	75%
Blast2go	niemann-pick c1	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
111		20		80	0.995503
114		20	80		0.995503
115			20	80	0.995505
117			20	80	0.995505
122		20		80	0.995505
126		20	20	60	0.99255
346	85			14	0.993533
347	85	14			0.993533
349	85			14	0.993533
351	14		85		0.993533
358	85		14		0.993533
360	85			14	0.993533
361	85		14		0.993533
362		85		14	0.993533
366		16	83		0.994515
367			75	25	0.996473
368		25	75		0.996473
369	25		75		0.996473
393		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain