SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77049

Length: 637 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene77049

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	quinone oxidoreductase-like protein [Arabidopsis thaliana]	-	-	2.0e-31	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	2-alkenal reductase	-	-	1.68156e-44	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	1.68156e-44	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	1.68156e-44	78%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.68156e-44	78%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	1.68156e-44	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.68156e-44	78%
Blast2go	nucleus	GO:0005634	Cellular Component	1.68156e-44	78%
Blast2go	cytosol	GO:0005829	Cellular Component	1.68156e-44	78%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
37		50		50	1.0
38	50		50		1.0
40		40		40	1.0
41			50	50	1.0
47	60	40			1.0
54	60	40			1.0
55			60	40	1.0
58		40	60		1.0
61			60	40	1.0
62	60	40			1.0
63	40			60	1.0
156	25	25			0.995563
157		75		25	0.996481
281	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain