SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77045

Length: 505 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene77045
CCACGTATTTGCTGTGAGCATGTTTGATGATTTTGATAGATACATGAAAGATCATTACTATTGGCTTTCTCTGGAGTCCAAGGCCACCCTCCCTTTTAAGCCCAGAGAAAGAGGAGGAGATTTCTAAGAATTTGAGAAAGTATAGCAAGAAGTATGAGGCTGAAGACCAGGATGTTTCATTGTTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAGATTGCAAGAGGAGTGGCAGGGCTGGGTCAATGAATGGAAACGCTTTCACGAGGAAGAGAAATTATATAGGCAGGAACTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGTTAGTAGATGTTACGGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGAGTGATTGTATAGCATGAATCTATTTGTGCCTCCATACAGGCATATATGATTGTGCCTTCATGCAGGGAGATAGCTTGGGCAGAAAATGCAGT

Ace file of the UniGene sp_v2.0_unigene77045

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit B n=1 Tax=Nicotiana tabacum RepID=EIF3B_TOBAC	-	-	7.0e-24	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	translation initiation factor 3 subunit b	-	-	3.21817e-36	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	3.21817e-36	87%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	3.21817e-36	87%
Blast2go	nucleus	GO:0005634	Cellular Component	3.21817e-36	87%
Blast2go	cytosol	GO:0005829	Cellular Component	3.21817e-36	87%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Translation initiation factor eIF-3b	IPR011400	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 137 - 724

Fln protein: TYLL*ACLMILIDT*KIITIGFLWSPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEEWQGWVNEWKRFHEEEKLYRQELRDGEPSDEEEEYEAEEVEVEELVDVTEEIASFGFEQMD*

Protein Length: 138

Fln nts: CCACGTATTTGCTGTGAGCATGTTTGATGATTTTGATAGATACATGAAAGATCATTACTATTGGCTTTCTCTGGAGTCCAAGGCCACCCTCCCTTTTAAGCCCAGAGAAAGAGGAGGAGATTTCTAAGAATTTGAGAAAGTATAGCAAGAAGTATGAGGCTGAAGACCAGGATGTTTCATTGTTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAGATTGCAAGAGGAGTGGCAGGGCTGGGTCAATGAATGGAAACGCTTTCACGAGGAAGAGAAATTATATAGGCAGGAACTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGTTAGTAGATGTTACGGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGA___GTGATTGTATAGCATGAATCTATTTGTGCCTCCATACAGGCATATATGATTGTGCCTTCATGCAGGGAGATAGCTTGGGCAGAAAATGCAGT

Fln Alignment:

AllPineV4_rep_c114157___NLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEEWQGWVNEWKRFHEEEKLYRQELRDGEPSDXXXXXXXXXXXXXXXXXXXXXIASFGFEQMD
A9NWV8_______________NLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEDWQGWVNEWKRLHEEEKLFRQDLRDGEPSDEEEEYEAEEVEVEELIDVTEEIASFGFEQLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain