SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76860

Length: 644 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene76860 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative ubiquitin protease [Oryza sativa Indica Group]	-	-	75%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	ubiquitin carboxyl-terminal hydrolase family protein	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
445		90		9	0.999842
447	9			90	0.999872
448		90	9		0.999872
449	90			9	0.999872
450			9	90	0.999872
455		9		90	0.999872
456	90	9			0.999872
457	9		90		0.999872
463		10		90	0.999898
464	10			90	0.999898
465		10		90	0.999898
524		69	30		1.0
525	76			23	1.0
526	69		23		1.0
527	23			69	1.0
529	30			69	1.0
536	69		30		1.0
538		30		69	1.0
540		30		69	1.0
545	69		30		1.0
573	87	12			0.992556
576		50		37	1.0
584		50		50	1.0
586			50	50	1.0
587		85		14	0.993534
590	50			50	1.0
591		50	50		1.0
592			50	50	1.0
599		50		50	1.0
619	33			66	0.997453
620	33		66		0.997453
625	33	66			0.997458
626	33	66			0.997458
627	66			33	0.997458
630	33		66		0.997476
632		66	33		0.997471
635		66		33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain