SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76020

Length: 393 nt

UniGene Fasta

>sp_v2.0_unigene76020
CGTCGTGACCTTGGCTGTCACTCAAAGTTTCGACATTATATTACTGGCTACACTACTTTTGTGCATACTGATCACTCTACCATTAAATATTTAATGAATAAACTAGTTACAAATGCTCGAGTTACCAGATGGTTGTTATTATTACAAGAATTCGACATCACAATTGTAGATAGGCCAGGAAAAGAGAATGTAGTTGTTGATTTCCTTTCTCGGTTAAAAACTAATGAAAATATTCTAGTAGATGATTCTTTTCCCAATGAGTATTTATTTGCAGTATCTGCTCACTCACCTTGGTATGCAGACATTGCTAACTACTTAGTTGCAGGGAAATTACCATCTCAACTATCACATAGAGAAAAGAGAAAAATCATTCAGCAAAGTGCTAGGTACAGC

Ace file of the UniGene sp_v2.0_unigene76020

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR	-	-	6.0e-27	51%
FL-Next	tr=Integrase; subsp. trichocarpa).	-	-	0.0	51%
Blast2go	uncharacterized protein loc100833674	-	-	6.7013e-31	64%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Viral nucleic acid binding	IPR008891	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Annexin repeat, conserved site	IPR018252	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q0ZCD0

Fln msg: Distance to subject end: 318 aas, your sequence is shorter than subject: 131 - 1139

Fln protein: RRDLGCHSKFRHYITGYTTFVHTDHSTIKYLMNKLVTNARVTRWLLLLQEFDITIVDRPGKENVVVDFLSRLKTNENILVDDSFPNEYLFAVSAHSPWYADIANYLVAGKLPSQLSHREKRKIIQQSARYS

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTTCGACATTATATTACTGGCTACACTACTTTTGTGCATACTGATCACTCTACCATTAAATATTTAATGAATAAACTAGTTACAAATGCTCGAGTTACCAGATGGTTGTTATTATTACAAGAATTCGACATCACAATTGTAGATAGGCCAGGAAAAGAGAATGTAGTTGTTGATTTCCTTTCTCGGTTAAAAACTAATGAAAATATTCTAGTAGATGATTCTTTTCCCAATGAGTATTTATTTGCAGTATCTGCTCACTCACCTTGGTATGCAGACATTGCTAACTACTTAGTTGCAGGGAAATTACCATCTCAACTATCACATAGAGAAAAGAGAAAAATCATTCAGCAAAGTGCTAGGTACAGC

Fln Alignment:

AllPineV4_rep_c110689___KFRHYITGYTTFVHTDHSTIKYLMNKLVTNARVTRWLLLLQEFDITIVDRPGKENVVVDFLSRLKTNEN---ILVDDSFPNEYLFAVSAHSPWYADIANYLVAGKLPSQLSHREKRKIIQQ
Q0ZCD0_______________KFRSYLVGSPVVVFSDHAALKYLLSKKDSKARLVRWILLLQEFDITIKDKKGTENVVADHLSRLTTDSRSDITPIDDYFPDESLFSVST-MPWYASIVNFLVSGQLPAHWSTQDKRKFLNE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain