SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75905

Length: 328 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75905
CGTCGTGACCTTGGCTGTCACTCAATCTTTTAGAGCAGGAACACTGATTGTGGATGCTAGAAATGCGAGCTTAGAAGAAGGTTCCTCTTTAAATACCACTGGCCTGGGTGGAAAACCACCTTCACAGACGAGTGGAACACCACTTGGGACTGATGGGGCAGGTGGAGGACATGGGGGCAGGGGAGCCTCCTGCGTTAAAGGTGATGACAAGGACCAAGAAGATACATGGGGTGGTGATGTTTATACTTGGTCTAATCTATCAGAGCCTTGGAGTTATGGCAGCAAAGGCGGAACAAGAAGCAGCCAAGAAGATCTCGGAGGTGGCGGA

Ace file of the UniGene sp_v2.0_unigene75905

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycine-rich protein	-	-	2.0e-20	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	protein	-	-	1.00145e-24	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	1.00145e-24	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR015706	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HGX5

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 109 - 276

Fln protein: VVTLAVTQSFRAGTLIVDARNASLEEGSSLNTTGLGGKPPSQTSGTPLGTDGAGGGHGGRGASCVKGDDKDQEDTWGGDVYTWSNLSEPWSYGSKGGTRSSQEDLGGGG

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTTTAGAGCAGGAACACTGATTGTGGATGCTAGAAATGCGAGCTTAGAAGAAGGTTCCTCTTTAAATACCACTGGCCTGGGTGGAAAACCACCTTCACAGACGAGTGGAACACCACTTGGGACTGATGGGGCAGGTGGAGGACATGGGGGCAGGGGAGCCTCCTGCGTTAAAGGTGATGACAAGGACCAAGAAGATACATGGGGTGGTGATGTTTATACTTGGTCTAATCTATCAGAGCCTTGGAGTTATGGCAGCAAAGGCGGAACAAGAAGCAGCCAAGAAGATCTCGGAGGTGGCGGA

Fln Alignment:

AllPineV4_rep_c110472___LAVTQSFRAGTLIVDARNASLEEGSSLNTTGLGGKPPSQTSXXXXXXXXXXXXXXXXXASCVKGDDKDQEDTWGGDVYTWSNLSEPWSYGSKGGTRSSQEDLGGGG
F6HGX5_______________MGVNSSIIAGTVFVEAQNASLSDGSIINVTALAGAPPPQTSGTPSGVQGSGGGHGGRGASCVTDNTKLPEDVWGGDAYSWSSLDEPKSYGSKGGTTSKEEDYGGGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain