SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75892

Length: 357 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75892
CGTCGTGACCTTGGCTGTCACTCATACTCTGACTGAATGGGGCTATCTTTTGTTTATTTTGTCCAATAATTTTCCAGTCATATATTACCTCTCATTTTGCAACCGTGGATTTGTTTGTCATTATTGAGGTGTTGGGTGGGTATTGTCTTCTGCAGATTTTGAGCCTTTGGTGACCTTGTGCTGTGGTTGGTGCTCTGGTTCAGCCGATTCACCAGTAAGACATGGCCAGCAAGCGCATTCAAAAAGAACTTCAGGACTTGCAGAGGGATCCCCCCACTTCCTGCAGTGCAGGGCCTGTGGGCGAAGATTTATTTCATTGGCAGGCAACCATAATGGGCCCAACTGAGAGCCCTTATG

Ace file of the UniGene sp_v2.0_unigene75892

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=4 Tax=Viridiplantae RepID=C5X897_SORBI	-	-	3.0e-17	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	ubiquitin-conjugating enzyme e2-17 kda 9	-	-	2.15759e-24	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	2.15759e-24	96%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Tryptophan metabolism	00380		2.15759e-24	96%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053		2.15759e-24	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	2.15759e-24	96%
Blast2go	acid-amino acid ligase activity	GO:0016881	Molecular Function	2.15759e-24	96%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLA0

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 45 - 148

Fln protein: MASKRIQKELQDLQRDPPTSCSAGPVGEDLFHWQATIMGPTESPY

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACTCTGACTGAATGGGGCTATCTTTTGTTTATTTTGTCCAATAATTTTCCAGTCATATATTACCTCTCATTTTGCAACCGTGGATTTGTTTGTCATTATTGAGGTGTTGGGTGGGTATTGTCTTCTGCAGATTTTGAGCCTTTGGTGACCTTGTGCTGTGGTTGGTGCTCTGGTTCAGCCGATTCACCAGTAAGAC_-_ATGGCCAGCAAGCGCATTCAAAAAGAACTTCAGGACTTGCAGAGGGATCCCCCCACTTCCTGCAGTGCAGGGCCTGTGGGCGAAGATTTATTTCATTGGCAGGCAACCATAATGGGCCCAACTGAGAGCCCTTATG

Fln Alignment:

AllPineV4_rep_c110446___MASKRIQKELQDLQRDPPTSCSAGPVGEDLFHWQATIMGPTESPY
A9NLA0_______________MASKRIQKELQDLQRDPPTSCSAGPVGEDLFHWQATIMGPTDSPY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain