SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75721

Length: 320 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75721
CGTCGTGACCTTGGCTGTCACTCATATTATAGGAGATTCATTAAAGACTTCAGCAAGCTAGCCTCGCCATTGTTTGGCCTCTTGGCAAAAGATGTGGAGTTTAATTGGATTGACGATTGTCAGAAGGCTCTGAATGAATTAAAGGACAAGTTGGTGTCTGCTCCAATCTTGAGAGGTCCAAACTGGGCCCTACCTTCCCACATCCACACTGATGCCTCGAACAAAGCCATAGGGGCAGCCTTAAGCAAGTTGAACAAAAACTTTCATATGCCATCTACTTTGTCAGCAAAAACTTATCCAAGGCAGAACTGAATTACACT

Ace file of the UniGene sp_v2.0_unigene75721

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	37%
Blast2go	uncharacterized protein loc100852619	-	-	9.79722e-22	67%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Protein of unknown function DUF789	IPR008507	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: your sequence is shorter than subject: 104 - 158

Fln protein: RRDLGCHSYYRRFIKDFSKLASPLFGLLAKDVEFNWIDDCQKALNELKDKLVSAPILRGPNWALPSHIHTDASNKAIGAALSKLNKNFHMPSTLSAKTYPRQN*

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTATAGGAGATTCATTAAAGACTTCAGCAAGCTAGCCTCGCCATTGTTTGGCCTCTTGGCAAAAGATGTGGAGTTTAATTGGATTGACGATTGTCAGAAGGCTCTGAATGAATTAAAGGACAAGTTGGTGTCTGCTCCAATCTTGAGAGGTCCAAACTGGGCCCTACCTTCCCACATCCACACTGATGCCTCGAACAAAGCCATAGGGGCAGCCTTAAGCAAGTTGAACAAAAACTTTCATATGCCATCTACTTTGTCAGCAAAAACTTATCCAAGGCAGAACTGA___ATTACACT

Fln Alignment:

AllPineV4_rep_c110097___LGCHSYYRRFIKDFSKLASPLFGLLAKDVEFNWIDDCQKALNELKDKLVSAPILRGPNWALP
P92523_______________LGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain