SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75212

Length: 398 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75212
CGTCGTGACCTTGGCTGTCACTCAATAGGTGATTTGGTTGTGGTTGATTGGGATGGATATACTATTGGTTATTATGGCCGTATTTTTGAGGCTCGAAATAAAACCAAAGGCGGGTCATTTGAGGTTATTCCTGCATTCGAGGAGGCCATTGCAAGTATGGCTGTTGGTGGGATCAGAAGAGTCATTGTACCACCTGAGCTGGGTTATCCTGGCAATGACTTCAACAATGCAGGTCCAAGACCAACAACTTTTTCGGGGGAAAGGGCTCTTGATTTTGTCTTGAAGAACCAGGGACTTATTGACAAGACACTACTCTTTGACATCGAACTACTTAAAGTGATTTCGGGATGATTTGTTATTACAGAAATTTAACTCGAAGTTGCATATTCAGGGTTCGC

Ace file of the UniGene sp_v2.0_unigene75212

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative FKBP-type peptidyl-prolyl cis-trans isomerase 7 [Arabidopsis thaliana] sp\|Q9LYR5.1\|FKBP7_ARATH RecName: Full=Probable FKBP-type peptidyl-prolyl cis-trans isomerase 7, chloroplastic; Short=PPIase; AltName: Full=Rotamase; Flags: Precursor emb\|CAB87	-	-	1.4013e-45	74%
FL-Next	sp=Probable FKBP-type peptidyl-prolyl cis-trans isomerase 7, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%
Blast2go	protein	-	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	0.0	81%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	0.0	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LYR5

Fln msg: your sequence is shorter than subject: 117 - 256

Fln protein: RRDLGCHSIGDLVVVDWDGYTIGYYGRIFEARNKTKGGSFEVIPAFEEAIASMAVGGIRRVIVPPELGYPGNDFNNAGPRPTTFSGERALDFVLKNQGLIDKTLLFDIELLKVISG*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGGTGATTTGGTTGTGGTTGATTGGGATGGATATACTATTGGTTATTATGGCCGTATTTTTGAGGCTCGAAATAAAACCAAAGGCGGGTCATTTGAGGTTATTCCTGCATTCGAGGAGGCCATTGCAAGTATGGCTGTTGGTGGGATCAGAAGAGTCATTGTACCACCTGAGCTGGGTTATCCTGGCAATGACTTCAACAATGCAGGTCCAAGACCAACAACTTTTTCGGGGGAAAGGGCTCTTGATTTTGTCTTGAAGAACCAGGGACTTATTGACAAGACACTACTCTTTGACATCGAACTACTTAAAGTGATTTCGGGATGA___TTTGTTATTACAGAAATTTAACTCGAAGTTGCATATTCAGGGTTCGC

Fln Alignment:

AllPineV4_rep_c109135___GDLVVVDWDGYTIGYYGRIFEARNKTKGGSFE---------------VIPAFEEAIASMAVGGIRRVIVPPELGYPGNDFNNAGPRPTTFSGERALDFVLKNQGLIDKTLLFDIELLKVI
Q9LYR5_______________GDKVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKEFFKFTLGSNEVIPAFEEAVSGMALGGIRRIIVPPELGYPDNDYNKSGPRPMTFSGQRALDFVLRNQGLIDKTLLFDVELLKIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain