SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75185

Length: 341 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75185
CGTCGTGACCTTGGCTGTCACTCATCTTCCGCCAATGCGCAGGCTCCCGCCCCTGCACCCATATCCGACGGTAACATCTCGACCCTCCATTTTATTTTGACAATGTCGGTCTTTAGGGCATTCTATAGGGGATTTTGATGTGCCGTAAAGGGGATTGAAGGAATGCATGCTGATGTTGTTGCAGGCACGGCCATTGACCAAGGAATAGCATATGTGCTCATGTTCTTGGCGCTGGTTCTGACGTACCTCATCCATCCCCTCGACGCTTTCCCTTATAATCTCTTTTGAGGGTCCAGCAATCTCTTATCAGTTTCTTGACAGAGATGAAAAGAAATAGAGAG

Ace file of the UniGene sp_v2.0_unigene75185

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arabinogalactan protein 20 [Arabidopsis thaliana] sp\|Q9M373.1\|AGP20_ARATH RecName: Full=Arabinogalactan peptide 20; Short=AG-peptide 20; Flags: Precursor emb\|CAB71094.1\| putative protein [Arabidopsis thaliana] gb\|AAM61203.1\| unknown [Arabidopsis thaliana]	-	-	1.0e-05	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	arabinogalactan peptide 16-like	-	-	2.68418e-14	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Arabinogalactan peptide, AGP	IPR009424	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL94

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 42 - 73

Fln protein: MHADVVAGTAIDQGIAYVLMFLALVLTYLIHPLDAFPYNLF*

Protein Length: 43

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCCGCCAATGCGCAGGCTCCCGCCCCTGCACCCATATCCGACGGTAACATCTCGACCCTCCATTTTATTTTGACAATGTCGGTCTTTAGGGCATTCTATAGGGGATTTTGATGTGCCGTAAAGGGGATTGAAGGA_-_ATGCATGCTGATGTTGTTGCAGGCACGGCCATTGACCAAGGAATAGCATATGTGCTCATGTTCTTGGCGCTGGTTCTGACGTACCTCATCCATCCCCTCGACGCTTTCCCTTATAATCTCTTTTGAGGGTCCAGCAATCTCTTATCAGTTTCTTGACAGAGATGAAAAGAAATAGAGAG

Fln Alignment:

AllPineV4_rep_c109085___GTAIDQGIAYVLMFLALVLTYLIHPLDAFPYNLF
A9NL94_______________GTSIDQGIAYVLMFLALALTYLIHPLDAFPYNLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain