SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75175

Length: 279 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75175
CGTCGTGACCTTGGCTGTCACTCATCCTCTATATCTTCATGTTTGTACAGATGGTTTTGATGGCCTGCATTACAATGTCAGTTTTCATCCGGACAAGAATGAAAATCGACATGGTGCATGGAAATTACTACTTGAGTGCTCTGTTCTTCTCACTTATTATCATTATGTTCAATGGCTATGCGGAGATAGCGATGACTATGGCTCGACTGCCCGTATTTTTCAAACAGAGAGACCTTTTGTTGTACCCAGCATGGACATACACTATTCCAACAGTTGTCC

Ace file of the UniGene sp_v2.0_unigene75175

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3 emb\|CAH39853.1\| PDR-like ABC transporter [Nicotiana tabacum]	-	-	4.0e-23	55%
FL-Next	sp=Pleiotropic drug resistance protein 3; Nicotiana tabacum (Common tobacco).	-	-	0.0	55%
Blast2go	atp-binding cassette transporter	-	-	3.88087e-29	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	root development	GO:0048364	Biological Process	3.88087e-29	78%
Blast2go	auxin polar transport	GO:0009926	Biological Process	3.88087e-29	78%
Blast2go	cellular response to indolebutyric acid stimulus	GO:0071366	Biological Process	3.88087e-29	78%
Blast2go	transporter activity	GO:0005215	Molecular Function	3.88087e-29	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.88087e-29	78%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5W274

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 822 aas, your sequence is shorter than subject: 92 - 1447

Fln protein: S*PWLSLILYIFMFVQMVLMACITMSVFIRTRMKIDMVHGNYYLSALFFSLIIIMFNGYAEIAMTMARLPVFFKQRDLLLYPAWTYTIPTVV

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCTATATCTTCATGTTTGTACAGATGGTTTTGATGGCCTGCATTACAATGTCAGTTTTCATCCGGACAAGAATGAAAATCGACATGGTGCATGGAAATTACTACTTGAGTGCTCTGTTCTTCTCACTTATTATCATTATGTTCAATGGCTATGCGGAGATAGCGATGACTATGGCTCGACTGCCCGTATTTTTCAAACAGAGAGACCTTTTGTTGTACCCAGCATGGACATACACTATTCCAACAGTTGTCC

Fln Alignment:

AllPineV4_rep_c109065___LYIFMFVQMVLMACITMSVFIRTRMKIDMVHGNYYLSALFFSLIIIMFNGYAEIAMTMARLPVFFKQRDLLLYPAWTYTIPTVV
Q5W274_______________IYIFKTVQLAIIASITMTVFLRTRMDTDLVHANYYLGALFYALIILLVDGFPELSMTITRLAVFYKQSELCFYPAWAYTIPATI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain