SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75039

Length: 327 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene75039
GTTTTGATGTTCTGGGAGCCTAGTGAGAACAATCACATTGGCATTTGACTATAGGATTTACATTTTCTGTACCTTATTATTTCCGAGGAATAACTTGCACCAATATACATTTCTGTCTTGGCAGGGTGAAGATTTGAAGAAGCAAATCGGGGCTGCAGCATACATTGAATGCAGTTCTAAAACACAACAGAATGTTAAGGCTGTTTTTGATGCCGCAATTAAGGTAGTTCTTCAACCACCAAAGCAAAAGAAACGCAGAAAGAAGCAAAGAACATGCTTTATTCTTTAAGGGCTTTATCTATCTTTGGCATCTGCAGAACTTTAAAG

Ace file of the UniGene sp_v2.0_unigene75039 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rop2, RHO family GTPase (Fragment) n=1 Tax=Selaginella moellendorffii RepID=D8T9D8_SELML	-	-	2.0e-11	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	rho family gtpase	-	-	1.02479e-16	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.02479e-16	92%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTPase superfamily, Rho type	IPR003578	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMN4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 96 - 196

Fln protein: F*CSGSLVRTITLAFDYRIYIFCTLLFPRNNLHQYTFLSWQGEDLKKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKRRKKQRTCFIL*

Protein Length: 97

Fln nts: GTTTTGATGTTCTGGGAGCCTAGTGAGAACAATCACATTGGCATTTGACTATAGGATTTACATTTTCTGTACCTTATTATTTCCGAGGAATAACTTGCACCAATATACATTTCTGTCTTGGCAGGGTGAAGATTTGAAGAAGCAAATCGGGGCTGCAGCATACATTGAATGCAGTTCTAAAACACAACAGAATGTTAAGGCTGTTTTTGATGCCGCAATTAAGGTAGTTCTTCAACCACCAAAGCAAAAGAAACGCAGAAAGAAGCAAAGAACATGCTTTATTCTTTAA___GGGCTTTATCTATCTTTGGCATCTGCAGAACTTTAAAG

Fln Alignment:

AllPineV4_rep_c108794___QGEDLKKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLXXXXXXXXXXXXRTCFIL
A9NMN4_______________QGEDLKRQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQPPRQKKRRKKQRTCFIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain