SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75001

Length: 321 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene75001
GTTTATCGTTTGTCTTGTCATTACTTGCAGTTTATGGGCTTCATCAATAATTTTGCTTGTACTGGCAATGATTGTGCTGGATATCATGGGTTTGATGGCACTGCTGGGTATTCAATTAATTGCAATCTCTGTGGTGAATCTTGTAATGTCAATTGGCATTGCAGTTGAGTTTTGTGTCCACATTACTCATGCATTCTCTGTGAGTGAAGGAGACAGGACACAACGCTTCGAGGTGTATTATTTTCAAATGTACCTTACCCTTGTGATACTGGGGTTCTTACATGGCCTTATTTTTCTACCAGTATTGTTCAGTATCTGTGG

Ace file of the UniGene sp_v2.0_unigene75001 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Niemann-Pick C1 protein [Arabidopsis thaliana] gb\|AEE31919.1\| Niemann-Pick C1 protein [Arabidopsis thaliana]	-	-	2.0e-22	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%
Blast2go	niemann-pick c1	-	-	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5APM6

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 106 - 1050

Fln protein: FIVCLVITCSLWASSIILLVLAMIVLDIMGLMALLGIQLIAISVVNLVMSIGIAVEFCVHITHAFSVSEGDRTQRFEVYYFQMYLTLVILGFLHGLIFLPVLFSIC

Protein Length: 107

Fln nts: GTTTATCGTTTGTCTTGTCATTACTTGCAGTTTATGGGCTTCATCAATAATTTTGCTTGTACTGGCAATGATTGTGCTGGATATCATGGGTTTGATGGCACTGCTGGGTATTCAATTAATTGCAATCTCTGTGGTGAATCTTGTAATGTCAATTGGCATTGCAGTTGAGTTTTGTGTCCACATTACTCATGCATTCTCTGTGAGTGAAGGAGACAGGACACAACGCTTCGAGGTGTATTATTTTCAAATGTACCTTACCCTTGTGATACTGGGGTTCTTACATGGCCTTATTTTTCTACCAGTATTGTTCAGTATCTGTGG

Fln Alignment:

AllPineV4_rep_c108712___FIVCLVITCSLWASSIILLVLAMIVLDIMGLMALLGIQLIAISVVNLVMSIGIAVEFCVHITHAFSVSEGDRTQR------------FEVYYFQMYLTLVILGFLHGLIFLPVLF
A5APM6_______________FIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMAVGIAVEFCVHITHAFSVSSGDRNQRMKEALGTMGASVFQVYYFQMYLALVLLGFLHGLVFLPVSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain