SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74861

Length: 309 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene74861
GACTTCCATTTCAACCCACCAGCAAGCCCTCTCAGGTGGGTTGAATGGAGTCAACATCTCACCCATGATCGATGGGGGTGAGTTTGATGGAGCTAAAGCATACAAGGATAGCAAAGTTTGCAATATGCTAACCATGCAGGAATTTCACAGAAGATATCATGAAGAGACTGGCATTACATTTGCATCACTATACCCAGGATGCATTGCTACTACAGGACTGTTCCGCGAGCATATTCCTCTGTTCAGGCTTCTTTTTCCACCTTTAGTAATGTATTTTTGGAAAGGTGGAAAAAGAAGCCTGAACAGAGG

Ace file of the UniGene sp_v2.0_unigene74861

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADPH-protochlorophyllide-oxidoreductase n=6 Tax=Pinaceae RepID=Q41202_PINMU	-	-	3.00004e-41	90%
FL-Next	tr=NADPH-protochlorophyllide-oxidoreductase; Pinus mugo (Dwarf mountain pine).	-	-	0.0	90%
Blast2go	protochlorophyllide reductase b	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Light-dependent protochlorophyllide reductase	IPR005979	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41202

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 102 - 400

Fln protein: TSISTHQQALSGGLNGVNISPMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPLVMYFWKGGKRSLNR

Protein Length: 103

Fln nts: GACTTCCATTTCAACCCACCAGCAAGCCCTCTCAGGTGGGTTGAATGGAGTCAACATCTCACCCATGATCGATGGGGGTGAGTTTGATGGAGCTAAAGCATACAAGGATAGCAAAGTTTGCAATATGCTAACCATGCAGGAATTTCACAGAAGATATCATGAAGAGACTGGCATTACATTTGCATCACTATACCCAGGATGCATTGCTACTACAGGACTGTTCCGCGAGCATATTCCTCTGTTCAGGCTTCTTTTTCCACCTTTAGTAATGTATTTTTGGAAAGGTGGAAAAAGAAGCCTGAACAGAGG

Fln Alignment:

AllPineV4_rep_c108456___QALSGGLNGVNISPMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPLVMYFWKG
Q41202_______________RGLAGGLNGVNISPMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain