SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74644

Length: 429 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74644
TTAATATGGAACTCTTTGAACTCTCATACTCACACCATGGGTAATCATTGTTTTCTTGGTTTTCTAGTCAATATTGTGCATATTTTCTTTTTCACCTGTTAATTACCCATTCGCAATAACCTTTTTGGTGTTCTTGGTTGGTGTTCTTGGTGCAGAGTATGCGCCATATGCCAATGTGAGTATGAAAGTGGGGATACAATCATGTCATTGCCTTGTGCCCATTCTTTCCATCACCTCTGTGGGTCAGAATGGCTTCTCAAGTACTCAAAGCTATGTCCTATTTGTAAGCTAGATGTTGTTGAGAACATGAAGGCTGATGATTGGAATTAATTGCTCAAAATTGTAGCCGAAACTGTATAATAAATAAATTGGTGAATCTGTCCATAACTCAACCATCTTTACCTGTAAATATCATTCATTCATTGTGGC

Ace file of the UniGene sp_v2.0_unigene74644 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger family-like protein (Fragment) n=4 Tax=Picea sitchensis RepID=E0ZH37_PICSI	-	-	3.0e-21	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	zinc finger family-like protein	-	-	3.0748e-27	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	3.0748e-27	71%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	3.0748e-27	71%
Blast2go	membrane	GO:0016020	Cellular Component	3.0748e-27	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQH3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 110 - 247

Fln protein: LIWNSLNSHTHTMGNHCFLGFLVNIVHIFFFTC*LPIRNNLFGVLGWCSWCRVCAICQCEYESGDTIMSLPCAHSFHHLCGSEWLLKYSKLCPICKLDVVENMKADDWN*

Protein Length: 111

Fln nts: TTAATATGGAACTCTTTGAACTCTCATACTCACACCATGGGTAATCATTGTTTTCTTGGTTTTCTAGTCAATATTGTGCATATTTTCTTTTTCACCTGTTAATTACCCATTCGCAATAACCTTTTTGGTGTTCTTGGTTGGTGTTCTTGGTGCAGAGTATGCGCCATATGCCAATGTGAGTATGAAAGTGGGGATACAATCATGTCATTGCCTTGTGCCCATTCTTTCCATCACCTCTGTGGGTCAGAATGGCTTCTCAAGTACTCAAAGCTATGTCCTATTTGTAAGCTAGATGTTGTTGAGAACATGAAGGCTGATGATTGGAATTAA___TTGCTCAAAATTGTAGCCGAAACTGTATAATAAATAAATTGGTGAATCTGTCCATAACTCAACCATCTTTACCTGTAAATATCATTCATTCATTGTGGC

Fln Alignment:

AllPineV4_rep_c107944___CAICQCEYESGDTIMSLPCAHSFHHLCGSEWLLKYSKLCPICKLDVVENMKAD
B8LQH3_______________CTICQCEYEFGDQIISLPCAHGFHNPCGAEWLLNHSKLCPICKHNVMDQKFVD

SSRs (tot: 1)

Start position	End position	Sequence	Length
6	18	AATG AATG AATG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain