SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74604

Length: 320 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene74604
AATGTAAGAGAATCGAACCAGAAGGCAAAGATTTTGAGGAAAGTAAATTATCCTTTAGAGTTGGATGTTCTAGATTTCTGTTCTGATGAGCTACGTGTGACGTTGGGTGTCACTCAATTCTTAGAGATCAAGAAAATACAAAATTTGGATTGAAGTCAAAGGGAAAGGAGAGTGATACCAAGGATAAATACGTGGAAATGTCAAATACAGAGGTATCCTTGAGTAACAGCTGTGAATCATCGAATAGCAATGCTTCTGGAGCTATGGACTTACAGAATCAAACACAGTATACTGGAATATATGATCTAGTTGCTGTGCTG

Ace file of the UniGene sp_v2.0_unigene74604

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Picea sitchensis RepID=A9NUT3_PICSI	-	-	6.0e-27	64%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	unknown [Picea sitchensis]	-	-	1.11421e-26	89%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUT3

Fln msg: Separated hits, possible frame ERROR between 105 and 117, Distance to subject end: 64 aas, your sequence is shorter than subject: 107 - 480

Fln protein: NVRESNQKAKILRKVNYPLELDVLDFCSDELRVTxxxxxILRDQENTKFGLKSKGKESDTKDKYVEMSNTEVSLSNSCESSNSNASGAMDLQNQTQYTGIYDLVAVL

Protein Length: 108

Fln nts: AATGTAAGAGAATCGAACCAGAAGGCAAAGATTTTGAGGAAAGTAAATTATCCTTTAGAGTTGGATGTTCTAGATTTCTGTTCTGATGAGCTACGTGTGACGTTxxxxxxxxxxxxAATTCTTAGAGATCAAGAAAATACAAAATTTGGATTGAAGTCAAAGGGAAAGGAGAGTGATACCAAGGATAAATACGTGGAAATGTCAAATACAGAGGTATCCTTGAGTAACAGCTGTGAATCATCGAATAGCAATGCTTCTGGAGCTATGGACTTACAGAATCAAACACAGTATACTGGAATATATGATCTAGTTGCTGTGCTG

Fln Alignment:

AllPineV4_rep_c107856___RESNQKAKILRKVNYPLELDVLDFCSDELRVTLxxxxILRDQENTKFGLKSKGKESDTKDKYVEMSNTEVXXXXXXXXXXXXXXGAMDLQNQTQYTGIYDLVAVL
A9NUT3_______________RESNQKAKILRKVNYPIELDVLDFCSDELREKLxxxxILRDQENTKFGLK-KGNQSDSKDKDVEMSNAEVSLSTSCESSNSNAAGAMDIQKQAQFTGIYDLVAVL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain