SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74602

Length: 298 nt

Origin of reads: Inia v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74602
CGTCGTGACCTTGGCTGTACTCTATTTGGTTGATGCGGCAGATAAAGAGAGATTTGCAGAGTCAAAAAAGGAGCTCGATGCCTTACGTAGACGCTCTTTGACAAATGTGCCTTTCTTGATTTTAGGAAACAAGATTGATATTCCATATGCAGCATCTGAAGATGAGCTGCGCTATTACCTAGGCCTATCAAATTATACAACTGGCAAGGGCAAAGTGAACTTGGCAGATTCTAATGTTAGACCGATTGAGGTCTTCATGTGCAGTATCGTTAGGAAAATGGGTTATGGTGAAGGTATT

Ace file of the UniGene sp_v2.0_unigene74602 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein SAR1A n=5 Tax=Embryophyta RepID=B4FPT6_MAIZE	-	-	2.0e-39	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	gtp-binding protein sar1a	-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	92%
Blast2go	cellular process	GO:0009987	Biological Process	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	92%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Small GTPase superfamily, SAR1-type	IPR006687	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLN7

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 99 - 193

Fln protein: VVTLAVLYLVDAADKERFAESKKELDALRRRSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGI

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTACTCTATTTGGTTGATGCGGCAGATAAAGAGAGATTTGCAGAGTCAAAAAAGGAGCTCGATGCCTTACGTAGACGCTCTTTGACAAATGTGCCTTTCTTGATTTTAGGAAACAAGATTGATATTCCATATGCAGCATCTGAAGATGAGCTGCGCTATTACCTAGGCCTATCAAATTATACAACTGGCAAGGGCAAAGTGAACTTGGCAGATTCTAATGTTAGACCGATTGAGGTCTTCATGTGCAGTATCGTTAGGAAAATGGGTTATGGTGAAGGTATT

Fln Alignment:

AllPineV4_rep_c107850___AVLYLVDAADKERFAESKKELDALRRR-SLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGI
A9NLN7_______________AVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRAIEVFMCSIVRKMGYGEGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain