SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74480

Length: 324 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74480
CAAACACAGGATATTTATGCAGAGTTGGAGAGATTATCTAGGCAGATGAAGGCAGCAGGGTATGTGCCTGACACAAGATTCGTGCTGCATGATGTGGAGGAGGAGCAAAAAGAACAAATTCTTTGCCACCATAGCGAGAAGCTGGCAATTGCATTTGGGCTTATAAACACACCTCCTGGGACAACAATCCGGATTATCAAGAATCTTCGAGTGTGTGGGGATTGCCACTCTGCTACCAAATTCATTTCTAAGATGGTTGGACGAGAGATTGTGGTGAGGGATGCCCACCGGTACCATCATTTCAAGGATGGATGGTGTTCATGT

Ace file of the UniGene sp_v2.0_unigene74480 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	pentatricopeptide repeat protein	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 108 - 370

Fln protein: QTQDIYAELERLSRQMKAAGYVPDTRFVLHDVEEEQKEQILCHHSEKLAIAFGLINTPPGTTIRIIKNLRVCGDCHSATKFISKMVGREIVVRDAHRYHHFKDGWCSC

Protein Length: 109

Fln nts: CAAACACAGGATATTTATGCAGAGTTGGAGAGATTATCTAGGCAGATGAAGGCAGCAGGGTATGTGCCTGACACAAGATTCGTGCTGCATGATGTGGAGGAGGAGCAAAAAGAACAAATTCTTTGCCACCATAGCGAGAAGCTGGCAATTGCATTTGGGCTTATAAACACACCTCCTGGGACAACAATCCGGATTATCAAGAATCTTCGAGTGTGTGGGGATTGCCACTCTGCTACCAAATTCATTTCTAAGATGGTTGGACGAGAGATTGTGGTGAGGGATGCCCACCGGTACCATCATTTCAAGGATGGATGGTGTTCATGT

Fln Alignment:

AllPineV4_rep_c107561___QTQDIYAELERLSRQMKAAGYVPDTRFVLHDVEEEQKEQILCHHSEKLAIAFGLINTPPGTTIRIIKNLRVCGDCHSATKFISKMVGREIVVRDAHRYHHFKDGWCSC
A9P0W0_______________QIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain