SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74431

Length: 380 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74431
GAGAATCATTTGTATCCTGATAGAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACAAGATTAGACATTGCCATAGATGTGACCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAACTAGTTCATTGTGATATAAAACCCAGCAATGTACTCTTGGATGAAGACATGTCAGACCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCACTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGGTATGACTTTTAAAACAATACTTTCACTTGTCTTTTCTCAGTAATAATTTTGTATTATATGGATTGGTTAAGTAAATCTTGATGA

Ace file of the UniGene sp_v2.0_unigene74431 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase [Medicago truncatula]	-	-	6.0e-20	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein kinase-like resistance protein	-	-	1.12625e-24	68%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Copine	IPR010734	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPN7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, your sequence is shorter than subject: 113 - 737

Fln protein: ENHLYPDRDDNNDEDLCELRLKTRLDIAIDVTHAMEYLHHDSFVQLVHCDIKPSNVLLDEDMSDHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAPGMTFKTILSLVFSQ*

Protein Length: 114

Fln nts: GAGAATCATTTGTATCCTGATAGAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACAAGATTAGACATTGCCATAGATGTGACCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAACTAGTTCATTGTGATATAAAACCCAGCAATGTACTCTTGGATGAAGACATGTCAGACCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCACTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGGTATGACTTTTAAAACAATACTTTCACTTGTCTTTTCTCAGTAATAATTTTGTATTATATGGATTGGTTAAGTAAATCTTGATGA

Fln Alignment:

AllPineV4_rep_c107465___ELRLKTRLDIAIDVTHAMEYLHHDSFVQLVHCDIKPSNVLLDEDMSDHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAP
C0PPN7_______________ELAWPIRHKIALGIASGLQYLHYNSTPKIIHRDLKPGNILLDEDFEARIADFGLAKALPEAATHASSSNVA--GTVGYIAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain