SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74378

Length: 350 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene74378
CCAAGCAGGCTGGTCTCCAGAGATGCGGTAGAAGCTGTAGGCTCAGATGGCTTAACTACTTACGCCCTGGCCTTAAGCGAGGAGCATTTTTACGAGAAGAAGAACGACTCGTTGTACACTTACAATCCATTCTAGGCAACAGGTGGTCGCAGATCGCCCTACATTTGCCGGGACGCACGGACAGTCACATAAAGAATTACTGGAACTCTTGCATCAACAAAAACGGAATCCGTACACTGACGACATGCCCGAAGGACACCAGACACCTTATAACACCTGCAATGTGGGGCCGACACCTGAAAATCACTTCTGCGGTACTGGCCATTTGGAATTAAAAGTGGAAGAAGCAG

Ace file of the UniGene sp_v2.0_unigene74378

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-Myb4 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPT6_PINPS	-	-	2.0e-29	64%
FL-Next	tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	78%
Blast2go	r2r3-myb transcription factor	-	-	2.10068e-35	84%

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A5JYE8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 172 aas, your sequence is shorter than subject: 111 - 334

Fln protein: KQAGLQRCGRSCRLRWLNYLRPGLKRGAFLREEERLVVHLQSILGNRWSQIALHLPGRTDSHIKNYWNSCINKNGIRTLTTCPKDTRHLITPAMWGRHLKITSAVLAIWN*

Protein Length: 112

Fln nts: CCAAGCAGGCTGGTCTCCAGAGATGCGGTAGAAGCTGTAGGCTCAGATGGCTTAACTACTTACGCCCTGGCCTTAAGCGAGGAGCATTTTTACGAGAAGAAGAACGACTCGTTGTACACTTACAATCCATTCTAGGCAACAGGTGGTCGCAGATCGCCCTACATTTGCCGGGACGCACGGACAGTCACATAAAGAATTACTGGAACTCTTGCATCAACAAAAACGGAATCCGTACACTGACGACATGCCCGAAGGACACCAGACACCTTATAACACCTGCAATGTGGGGCCGACACCTGAAAATCACTTCTGCGGTACTGGCCATTTGGAATTAAAAGTGGAAGAAGCAG

Fln Alignment:

AllPineV4_rep_c107360___KQAGLQRCGRSCRLRWLNYLRPGLKRGAFLREEERLVVHLQSILGNRWSQIALHLPGRTDSHIKNYWNSCINK
A5JYE8_______________KQAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSCIKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain