SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72864

Length: 247 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72864
CGTCGTGACCTTGGCTGTCACTCAATATTTTCATAGTACAGATAATGATGAAGGTGAAGAACTCGTACTCCTCAATAATAGACACATAATATTTACTATGGAAACATTACTAGCTTCCACTAAAAATTTTGATAATCAGAACAAGCTTGGAGAAGGAGGATTCGGCCCTGTGTACAAGGGAACTACACCAGATGGAAAAGAAATAGCCGTGAAAAAACTGTCCTTCAAATCTATGCAAGGAAGAAAA

Ace file of the UniGene sp_v2.0_unigene72864

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGG9.2\|Y5344_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g53440; Flags: Precursor gb\|AEE32941.1\| putative LRR receptor-like serine	-	-	8.0e-14	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	leucine-rich repeat transmembrane protein kinase	-	-	3.28164e-16	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.28164e-16	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Distance to subject end: 297 aas, your sequence is shorter than subject: 82 - 702

Fln protein: VVTLAVTQYFHSTDNDEGEELVLLNNRHIIFTMETLLASTKNFDNQNKLGEGGFGPVYKGTTPDGKEIAVKKLSFKSMQGRK

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTTCATAGTACAGATAATGATGAAGGTGAAGAACTCGTACTCCTCAATAATAGACACATAATATTTACTATGGAAACATTACTAGCTTCCACTAAAAATTTTGATAATCAGAACAAGCTTGGAGAAGGAGGATTCGGCCCTGTGTACAAGGGAACTACACCAGATGGAAAAGAAATAGCCGTGAAAAAACTGTCCTTCAAATCTATGCAAGGAAGAAAA

Fln Alignment:

AllPineV4_rep_c104389___HSTDNDEGEELVL--LNNRHIIFTMETLLASTKNFDNQNKLGEGGFGPVYKGTTPDGKEIAVKKLSFKSMQ
C0PPW7_______________YRTGGDEGDSVLMPTIANPELIFKFDILRESTSNFKAENKLGEGGFGSVFKGVLPDGREVAVKRLFMGTRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain