SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72859

Length: 297 nt

UniGene Fasta

>sp_v2.0_unigene72859
CGTCGTGACCTTGGCTGTCACTCAATTTGTTTGGAGAAATACCTCCAGACATGGGAAGTTTGAGTAGCTTATGGTTGTTGAATTTATCTGGAAATAGTTTGGAAGGGCACCTTCGTGATCTTGGGTGTGACTCTATTTTGGAACAGCTGGATTTGTCTAGAAATAATTTGAGTGGAAGATTTCCTCAATCTCTGTCAACATTATTTAATTTAGAAGTTTTGAATGTTTCATGTAACAAACTTTGTGGACCAATTCCAAAAGGATCACAGTTGGACACTTTTGATGCCACTTCATTTC

Ace file of the UniGene sp_v2.0_unigene72859

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peru 2 [Solanum peruvianum]	-	-	4.0e-10	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	receptor-like protein kinase	-	-	3.97998e-15	66%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Pentaxin	IPR001759	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 87 aas, your sequence is shorter than subject: 98 - 818

Fln protein: S*PWLSLNLFGEIPPDMGSLSSLWLLNLSGNSLEGHLRDLGCDSILEQLDLSRNNLSGRFPQSLSTLFNLEVLNVSCNKLCGPIPKGSQLDTFDATSF

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTTTGGAGAAATACCTCCAGACATGGGAAGTTTGAGTAGCTTATGGTTGTTGAATTTATCTGGAAATAGTTTGGAAGGGCACCTTCGTGATCTTGGGTGTGACTCTATTTTGGAACAGCTGGATTTGTCTAGAAATAATTTGAGTGGAAGATTTCCTCAATCTCTGTCAACATTATTTAATTTAGAAGTTTTGAATGTTTCATGTAACAAACTTTGTGGACCAATTCCAAAAGGATCACAGTTGGACACTTTTGATGCCACTTCATTTC

Fln Alignment:

AllPineV4_rep_c104382___SLNLFGEIPPDMXXXXXXXXXXXXXXXXEGHL-RDLGCDSILEQLDLSRNNLSGRFPQSLSTLFNLEVLNVSCNKLCGPIPKGSQLDTFDATSF
B8LQX6_______________SNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRIPLGTQFDTFNATSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain