SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72040

Length: 304 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72040
CGTCGTGACCTTGGCTGTCACTCAATACTGAAGTGTGATTATTGTGTTGCCAAGCTTCAACTTCTCTGCGGATGTGTTAAGGTTATCAGCTTTAGAGAATGCAGAGATAAAGAAGCAGGTACTAGAGTTGCTCGATAAGGGGTTTATATGACCAAGCACATCACCATGTGGATCGCCAATCGTGCTGGTGAGAAAGAAAGAGGGTTTGTGGAGAATGTGTATTGATTGTAGAGCACTAAATAAAATAACGAAGAATCGTTATCCTCTTCCTTGAATAGATGATTTGTAGATCAATTGAAAGATG

Ace file of the UniGene sp_v2.0_unigene72040

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative reverse-transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9T0B7_ARATH	-	-	4.0e-16	60%
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	67%
Blast2go	pol polyprotein	-	-	5.31977e-20	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	5.31977e-20	79%
Blast2go	macromolecule metabolic process	GO:0043170	Biological Process	5.31977e-20	79%
Blast2go	primary metabolic process	GO:0044238	Biological Process	5.31977e-20	79%
Blast2go	binding	GO:0005488	Molecular Function	5.31977e-20	79%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: Q2AA41

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 245 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 81 - 335

Fln protein: SVIIVLPSFNFSADVLRLSALENAEIKKQVLELLDKGFI*PSTSPCGSPIVLVRKKEGLWRMCIDCRALNKITKNRYPLP*

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACTGAAGTGTGATTATTGTGTTGCCAAGCTTCAACTTCTCTGCGGATGTGTTAAGGTTATCAGCTTTAGAGAATGCAGAGATAAAGAAGCAGGTACTAGAGTTGCTCGATAAGGGGTTTATATGACCAAGCACATCACCATGTGGATCGCCAATCGTGCTGGTGAGAAAGAAAGAGGGTTTGTGGAGAATGTGTATTGATTGTAGAGCACTAAATAAAATAACGAAGAATCGTTATCCTCTTCCTTGAATAGATGATTTGTAGATCAATTGAAAGATG

Fln Alignment:

AllPineV4_rep_c102696___RLSALENAEIKKQVLELLDKGFI*PSTSPCGSPIVLVRKKEGLWRMCIDCRALNKIT-KNRYPLP*IDDL
Q2AA41_______________RTSVQESEEIKKQVQELLEMGVIVPSCSPCGSSVLLVLKKDGGWLMCMDYRALNKITIKDRYPLPRIDDL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain