SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71941

Length: 413 nt

UniGene Fasta

>sp_v2.0_unigene71941
CGTCGTGACCTTGGCTGTCACTCATTTTTCCATGAAAGGGAATGCCTATTTCAATGTGGTGGTCATAAGCAACGTCGTCGTGAGTTGGCTGTCGGTCGTGTGGGTAAATGCAGATGGGTTTGGAGCTGATAACTGGCAGCCGTTGCACAGAAACTGGGGGGCCAATTGGCTATACACCAGCGGTAACCTGCGAGGGAAGGCGTTGTCCTTGCGAGTGACTATAGGTGATGGGCAGACTCTAACCTTCTACAATGTGATACCTCCCAACTGGCAATTCGGCCAAACCTTCTTCTCTAGCCTACAGTTCAAATAATCAGCTATTGATATGCCCAGAATAAGTAGGTCTCAGTCGAGTATTCCTGTCCTTCTATTGTTATTTGGTTAGATGCAGAATAATCAGCTATTCATTCCAC

Ace file of the UniGene sp_v2.0_unigene71941

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin n=1 Tax=Sagittaria pygmaea RepID=Q4LET2_9LILI	-	-	1.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	alpha-expansin 24	-	-	1.37747e-17	70%

Source	InterPros	Term	Type	Identity
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU9

Fln msg: your sequence is shorter than subject: 104 - 247

Fln protein: VVTLAVTHFSMKGNAYFNVVVISNVVVSWLSVVWVNADGFGADNWQPLHRNWGANWLYTSGNLRGKALSLRVTIGDGQTLTFYNVIPPNWQFGQTFFSSLQFK*

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCCATGAAAGGGAATGCCTATTTCAATGTGGTGGTCATAAGCAACGTCGTCGTGAGTTGGCTGTCGGTCGTGTGGGTAAATGCAGATGGGTTTGGAGCTGATAACTGGCAGCCGTTGCACAGAAACTGGGGGGCCAATTGGCTATACACCAGCGGTAACCTGCGAGGGAAGGCGTTGTCCTTGCGAGTGACTATAGGTGATGGGCAGACTCTAACCTTCTACAATGTGATACCTCCCAACTGGCAATTCGGCCAAACCTTCTTCTCTAGCCTACAGTTCAAATAA___TCAGCTATTGATATGCCCAGAATAAGTAGGTCTCAGTCGAGTATTCCTGTCCTTCTATTGTTATTTGGTTAGATGCAGAATAATCAGCTATTCATTCCAC

Fln Alignment:

AllPineV4_rep_c102501___WQPLHRNWGANWLYTSGNLRGKALSLRVTIGDGQTLTFYNVIPPNWQFGQTF
A9NXU9_______________WQAMSRNWGQNW-QSNSYLNGQGLSFKVTTSDGRTVTSYNVAPSNWQFGQTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain