SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71940

Length: 267 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71940
CGTCGTGACCTTGGCTGTCACTCATTTGAGTCATGTTCCACAATCATTTCTCTCCACCGTCATCTCTCTCAGGGTTCTGGATCTGTCCTGTACTGGTATTACAGGGTTGCCAAAATCAATGGAGGAACTCAGACTGCTTGAGTTCCTTGATTTGAGTGACTGTTGGAAATTGATAGAGTTGCCTGAGAGCATTGGTAATCTTTCAGCGCTCCAATTTTTCAATCTTAAATGGTGTTCTAAGTTGAAGGTTTGCCCAGTACAATAAGA

Ace file of the UniGene sp_v2.0_unigene71940

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WS02937.CR_B13 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02937_B13 3', mRNA sequence.	-	-	1.0e-17	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	tmv resistance protein n-like	-	-	4.6491e-17	65%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR32

Fln msg: your sequence is shorter than subject: 88 - 642

Fln protein: VVTLAVTHLSHVPQSFLSTVISLRVLDLSCTGITGLPKSMEELRLLEFLDLSDCWKLIELPESIGNLSALQFFNLKWCSKLKVCPVQ*

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGAGTCATGTTCCACAATCATTTCTCTCCACCGTCATCTCTCTCAGGGTTCTGGATCTGTCCTGTACTGGTATTACAGGGTTGCCAAAATCAATGGAGGAACTCAGACTGCTTGAGTTCCTTGATTTGAGTGACTGTTGGAAATTGATAGAGTTGCCTGAGAGCATTGGTAATCTTTCAGCGCTCCAATTTTTCAATCTTAAATGGTGTTCTAAGTTGAAGGTTTGCCCAGTACAATAA___GA

Fln Alignment:

AllPineV4_rep_c102499___LSHVPQSFLSTVISLRVLDLSCTGITGLPKSMEELRLLEFLDLSDCWKLIELPESIGNLSALQFFNLKWCSKLKVCP
B8LR32_______________IREVPELFLSTAMPLKVLDLSCTSITSLPTSLGQLGQLEFLNLSGCSFLKNLPESTGNLSRLRFLNIEICVSLESLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain