SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71207

Length: 357 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71207
CGTCGTGACCTTGGCTGTCACTCAAACAAATTCCACCGTTGGATGAATTACTTGGGCGAGGGGCTAGCGTTCATTGACTCATTGAAGCAGTTCTGTCAGCTTTGTTATCGGTGGAAGCATTAACCTGGGACAGTGAACAGTTTAGGGACGTCAGGGAATGATGAGGATCAGTTCAGCCAAGATTCTGGCTTTGGTTGTATGCCTGACCTTTCTGACGGTCACAGCTCTGGCAACAGATATACTCAGACACACTTTCGTATTGAAGCAAAGCCTGTGACTAGACTATGCAAGACGCATGATATAATTATCGTAAATGGACAGTTTCCAGGCCCAACGCTGCATGTGAGGAATGGAGAC

Ace file of the UniGene sp_v2.0_unigene71207

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase, putative n=1 Tax=Ricinus communis RepID=B9RRH6_RICCO	-	-	1.0e-08	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	diphenol oxidase laccase	-	-	2.61304e-21	75%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF9

Fln msg: Overlapping hits, possible frame ERROR between 265 and 253, Distance to subject end: 505 aas, your sequence is shorter than subject: 67 - 573

Fln protein: MMRISSAKILALVVCLTFLTVTALATDILRHxxxxxxKPVTRLCKTHDIIIVNGQFPGPTLHVRNGD

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACAAATTCCACCGTTGGATGAATTACTTGGGCGAGGGGCTAGCGTTCATTGACTCATTGAAGCAGTTCTGTCAGCTTTGTTATCGGTGGAAGCATTAACCTGGGACAGTGAACAGTTTAGGGACGTCAGGGA_-_ATGATGAGGATCAGTTCAGCCAAGATTCTGGCTTTGGTTGTATGCCTGACCTTTCTGACGGTCACAGCTCTGGCAACAGATATACTCAGACACxxxxxxxxxxxxxxxxxxAAGCCTGTGACTAGACTATGCAAGACGCATGATATAATTATCGTAAATGGACAGTTTCCAGGCCCAACGCTGCATGTGAGGAATGGAGAC

Fln Alignment:

AllPineV4_rep_c101035___MRISSAKILALVVCLTFLTVTALATDILRHTxxxxAKPVTRLCKTHDIIIVNGQFPGPTLHVRNGD
B8LPF9_______________MGISSARILALVVCLTFLAVTALAEHVIRHTxxxxAKPVTRLCKTHNVIIVNGQFPGPTLHVRNGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain