SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70497

Length: 327 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene70497
AATGTAGGAGAGAGAAGTAATTACAAACTCGTGGGGTTGGCTGTCAGTGGGGTTATTTGTTGTACGGCCCCCCTGGAACTGGCAAGTCCAGTATGATTGCTGCCATGGCTAACTTTCTGGATTACGACATCTACGACCTGGAGCTGACCCAAGTGAAGAACAATGCGGCACTGAGGAAGCTTTTGATCGCGACCACCAACAAATCGATAATCGTGATAGAAGATATTGACTGTTCTCTTGATCTCTCGAACCGCAAGAAGAAGAAGAAGGCGGCACAGACAGATGACGAGAAGGCAAAAAGCCGTCGGAGCCTGGTAAGCCGGATGA

Ace file of the UniGene sp_v2.0_unigene70497

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9R919_RICCO	-	-	4.0e-29	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	atp binding	-	-	3.1127e-41	81%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3		IPR001984	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase-like, arabidopsis	IPR007942	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLW3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 149 aas, your sequence is shorter than subject: 108 - 473

Fln protein: CRREK*LQTRGVGCQWGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNAALRKLLIATTNKSIIVIEDIDCSLDLSNRKKKKKAAQTDDEKAKSRRSLVSRM

Protein Length: 109

Fln nts: AATGTAGGAGAGAGAAGTAATTACAAACTCGTGGGGTTGGCTGTCAGTGGGGTTATTTGTTGTACGGCCCCCCTGGAACTGGCAAGTCCAGTATGATTGCTGCCATGGCTAACTTTCTGGATTACGACATCTACGACCTGGAGCTGACCCAAGTGAAGAACAATGCGGCACTGAGGAAGCTTTTGATCGCGACCACCAACAAATCGATAATCGTGATAGAAGATATTGACTGTTCTCTTGATCTCTCGAACCGCAAGAAGAAGAAGAAGGCGGCACAGACAGATGACGAGAAGGCAAAAAGCCGTCGGAGCCTGGTAAGCCGGATGA

Fln Alignment:

AllPineV4_rep_c99536___RGVGCQW--GYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNAALRKLLIATTNKSIIVIEDIDCSLDLSNRKKKKKAAQTDDEKAK
B8LLW3_______________RQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLVATTNKSIIVIEDIDCSLDLSDRKKKKKPEKDSEEKEK

SSRs (tot: 1)

Start position	End position	Sequence	Length
255	269	AAG AAG AAG AAG AAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain