SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70410

Length: 533 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene70410
CGTCGTGACCTTGGCTGTCACTCAGGGATTGAGAGGAAAATGGATAAAATTATTTATTTCCTCTTCAGTATGTTGGTTTTGATTGCATTGGTTGGTTCAATAGCCTTTGGTGTCAAAACTAGGGATGACATGCCAGATTGGTGGTACTTAAGACCTGATGATGCAAATGCTTATTTTAATCCTGATAATCCAGCTTTAGCAGCATTTTTGCACTTTGTGACAGCACTTATCCTGTATGGTTACCTCATCCCAATTTCTCTCTATGTATCAATAGAAATTGTGAAGGTCGCACAGACAATGTTTATTAATAAGGACCAGCAAATGTATTATGCAGAAACAGACAAGCCTGCACAAGCCCGCACATCCAATTTGAATGAAGAACTTGGGCAGGTTGATACTATCCTATCTGATAAAACTGGTACACTTACCTGCAATTCAATGGAGTTCCTAAAGTGCTCTATTGCGGGTACTGCATATGGTCAAGGTATGACGGAGGTGGAAAGGGCAATGGCAAAAAGGCTAGGGAAAGATGC

Ace file of the UniGene sp_v2.0_unigene70410 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipid-translocating ATPase [Arabidopsis thaliana] sp\|Q9LK90.1\|ALA8_ARATH RecName: Full=Putative phospholipid-transporting ATPase 8; Short=AtALA8; AltName: Full=Aminophospholipid flippase 8 dbj\|BAB02533.1\| P-type transporting ATPase-like protein [Ar	-	-	69%
FL-Next	sp=Putative phospholipid-transporting ATPase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	phospholipid-transporting atpase 9-like	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LK90

Fln msg: Distance to subject end: 724 aas, your sequence is shorter than subject: 177 - 1189

Fln protein: RRDLGCHSGIERKMDKIIYFLFSMLVLIALVGSIAFGVKTRDDMPDWWYLRPDDANAYFNPDNPALAAFLHFVTALILYGYLIPISLYVSIEIVKVAQTMFINKDQQMYYAETDKPAQARTSNLNEELGQVDTILSDKTGTLTCNSMEFLKCSIAGTAYGQGMTEVERAMAKRLGKD

Protein Length: 178

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGATTGAGAGGAAAATGGATAAAATTATTTATTTCCTCTTCAGTATGTTGGTTTTGATTGCATTGGTTGGTTCAATAGCCTTTGGTGTCAAAACTAGGGATGACATGCCAGATTGGTGGTACTTAAGACCTGATGATGCAAATGCTTATTTTAATCCTGATAATCCAGCTTTAGCAGCATTTTTGCACTTTGTGACAGCACTTATCCTGTATGGTTACCTCATCCCAATTTCTCTCTATGTATCAATAGAAATTGTGAAGGTCGCACAGACAATGTTTATTAATAAGGACCAGCAAATGTATTATGCAGAAACAGACAAGCCTGCACAAGCCCGCACATCCAATTTGAATGAAGAACTTGGGCAGGTTGATACTATCCTATCTGATAAAACTGGTACACTTACCTGCAATTCAATGGAGTTCCTAAAGTGCTCTATTGCGGGTACTGCATATGGTCAAGGTATGACGGAGGTGGAAAGGGCAATGGCAAAAAGGCTAGGGAAAGATGC

Fln Alignment:

AllPineV4_c99340___SGIERKMDKIIYFLFSMLVLIALVGSIAFGVKTRDDMPD-----WWYLRPDDANAYFNPDNPALAAFLHFVTALILYGYLIPISLYVSIEIVKVAQTMFINKDQQMYYAETDKPAQARTSNLNEELGQVDTILSDKTGTLTCNSMEFLKCSIAGTAYGQGMTEVERAMAKRLG
Q9LK90_______________SKIEKKMDQIIYILFSILIVIAFTGSVFFGIATRRDMSDNGKLRRWYLRPDHTTVFYDPRRAVAAAFFHFLTALMLYGYLIPISLYVSIEVVKVLQSIFINQDQEMYHEETDRPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIAGTAYGRGMTEVEVALRKQKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain