SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70246

Length: 374 nt

Origin of reads: Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene70246
CTTGGACACAGGACGAAGACCTTCGCTTGACTCAGTTTGTACGAGCTCATGGTGAAGGATGCTGGTCTGCTCTAGCTAAGAAGGCAGGTCTGAAGCGCTGTGGAAAGAGTTGCAGGTTTCGTTGGGTGAACTATCTTCGACCAAACCTCAAACGTGGTAAATTTTCACCGGAAGAAGACGACCTTATAATAAGACTTCATAAACTTCTGGGAAACCGGTGGTCATTAATTGCCGGTCGTATACCGGGTAGAACTGATAACGAAGTCAAGAACTACTGGAATACTCGTTTGAGCAAGAAAGCTCAATTGAATTGCAGGAGACCAACGGAGCCAAATAGCAAGGAACCGGCTGTGAGTATTATTCCTGCAACAAGT

Ace file of the UniGene sp_v2.0_unigene70246 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7STW5_VITVI	-	-	3.99931e-42	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	transcription factor	-	-	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXX6

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 124 - 242

Fln protein: WTQDEDLRLTQFVRAHGEGCWSALAKKAGLKRCGKSCRFRWVNYLRPNLKRGKFSPEEDDLIIRLHKLLGNRWSLIAGRIPGRTDNEVKNYWNTRLSKKAQLNCRRPTEPNSKEPAVSIIPATS

Protein Length: 125

Fln nts: CTTGGACACAGGACGAAGACCTTCGCTTGACTCAGTTTGTACGAGCTCATGGTGAAGGATGCTGGTCTGCTCTAGCTAAGAAGGCAGGTCTGAAGCGCTGTGGAAAGAGTTGCAGGTTTCGTTGGGTGAACTATCTTCGACCAAACCTCAAACGTGGTAAATTTTCACCGGAAGAAGACGACCTTATAATAAGACTTCATAAACTTCTGGGAAACCGGTGGTCATTAATTGCCGGTCGTATACCGGGTAGAACTGATAACGAAGTCAAGAACTACTGGAATACTCGTTTGAGCAAGAAAGCTCAATTGAATTGCAGGAGACCAACGGAGCCAAATAGCAAGGAACCGGCTGTGAGTATTATTCCTGCAACAAGT

Fln Alignment:

AllPineV4_rep_c99007___WTQDEDLRLTQFVRAHGEGCWSALAKKAGLKRCGKSCRFRWVNYLRPNLKRGKFSPEEDDLIIRLHKLLGNRWSLIAGRIPGRTDNEVKNYWNTRLSKK
A9NXX6_______________WTKEEDDRLIQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain