SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70059

Length: 489 nt

UniGene Fasta

>sp_v2.0_unigene70059
ATGGGGGCATGGAAATTCACGAAGACATTATTAGAAGTGGATTGCAGGTTGATGCTTTCGTGGGGAACGCGCTTGTAGACATGTACGCCAAATGTGGGAGTTTAGAGAATGCACGCAAACTGTTTGACAGAATGCCTGGACAAGATGTAGTTTCATGGACTGCAATGATTGGAGGATATGCCATGCATGGTTTGGCAATGAGGCCCTGCAACTCTTTGAACAAATGCAATGCTCGGGTGTGAAACCAGACCATGTCACCTTTGTTGCTGTTCTGTCTGCGTGCTGCCATGCAGGCCTTGTGGAGGATGGCTGGCGATACTTCAATTCCATAAGTTGGGATCATCAAATCACGCCTATAATGGAACACTACTGCTGCATGGTTGACCTCATGGGCCGGGCTGGGCTCCTGCACGAGGCACAAGACTTTATCAACAAAATGCCAATTGAACCTGATGCTGCTGTGTGGGCGTCTATGCTTGCTGCCTGTAG

Ace file of the UniGene sp_v2.0_unigene70059

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WS02942.CR_C07 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02942_C07 3', mRNA sequence.	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	pentatricopeptide repeat-containing protein	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR003612	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3		IPR011523	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Translation elongation factor EFTs/EF1B, dimerisation	IPR014039	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Separated hits, possible frame ERROR between 191 and 194, Distance to subject end: 22 aas, your sequence is shorter than subject: 162 - 232

Fln protein: GGMEIHEDIIRSGLQVDAFVGNALVDMYAKCGSLENARKLFDRMPGQDVVSWTAMIGGYAMHxxGNEALQLFEQMQCSGVKPDHVTFVAVLSACCHAGLVEDGWRYFNSISWDHQITPIMEHYCCMVDLMGRAGLLHEAQDFINKMPIEPDAAVWASMLAAC

Protein Length: 163

Fln nts: ATGGGGGCATGGAAATTCACGAAGACATTATTAGAAGTGGATTGCAGGTTGATGCTTTCGTGGGGAACGCGCTTGTAGACATGTACGCCAAATGTGGGAGTTTAGAGAATGCACGCAAACTGTTTGACAGAATGCCTGGACAAGATGTAGTTTCATGGACTGCAATGATTGGAGGATATGCCATGCATGGxxxTGGCAATGAGGCCCTGCAACTCTTTGAACAAATGCAATGCTCGGGTGTGAAACCAGACCATGTCACCTTTGTTGCTGTTCTGTCTGCGTGCTGCCATGCAGGCCTTGTGGAGGATGGCTGGCGATACTTCAATTCCATAAGTTGGGATCATCAAATCACGCCTATAATGGAACACTACTGCTGCATGGTTGACCTCATGGGCCGGGCTGGGCTCCTGCACGAGGCACAAGACTTTATCAACAAAATGCCAATTGAACCTGATGCTGCTGTGTGGGCGTCTATGCTTGCTGCCTGTAG

Fln Alignment:

AllPineV4_rep_c98614___GMEIHEDIIRSGLQVDAFVGNALVDMYAKCGSLENARKLFDRMPGQDVVSWTAMIGGYAMHGxGNEALQLFEQMQCSGVKPDHVTFVAVLSACCHAGLVEDGWRYFNSISWDHQITPIMEHYCCMVDLMGRAGLLHEAQDFINKMPIEPDAAVWASMLAAC
D5AB53_______________GKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGxGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMPIEPDTAVWQSLLGAC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain