SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69962

Length: 439 nt

UniGene Fasta

>sp_v2.0_unigene69962
CAATTACTTTTGTGAAGTTGTTCCTCGTAATGTATTGTCAAAGTTTTACTAATGAGATTGAGAAGGAATGTGCTCAAGATCATTTCTTTGATGTGATCACCAACACAATTGGTCTAATTGTTGTTATTCTTGCAAGTACTCTCTACTGGTGGATAGATCCTACTAGAGCAATTGTGGAACAAAACATGTGGGCTTAAAATCACTCTGGAAGCTATGACCAGCAACTGCAAGCGTTGGCATGGCGACAGGGCAATTCAATTACTTTGGCAATTAATCAATCAGTCTGTGGCTATATTTATATTTACCTATTATGCCTTCTTTTGTAAAGTCGGGAGGCGCAGCACGCTCCATTGACTGTGTACTGATTTCAATCTTGTAGCACTGGACATGGCCGGCCACCCAGCAGGCCATGGAGATATTTTGTAGTATTCTTGGTATT

Ace file of the UniGene sp_v2.0_unigene69962

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metal tolerance protein 11 n=9 Tax=Brassicaceae RepID=MTP11_ARATH	-	-	2.0e-15	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	metal tolerance protein	-	-	1.87995e-22	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to copper ion	GO:0046688	Biological Process	1.87995e-22	77%
Blast2go	cellular manganese ion homeostasis	GO:0030026	Biological Process	1.87995e-22	77%
Blast2go	response to manganese ion	GO:0010042	Biological Process	1.87995e-22	77%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	1.87995e-22	77%
Blast2go	manganese:hydrogen antiporter activity	GO:0010486	Molecular Function	1.87995e-22	77%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.87995e-22	77%
Blast2go	late endosome	GO:0005770	Cellular Component	1.87995e-22	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cation efflux protein	IPR002524	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTR8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 27 aas, your sequence is shorter than subject: 65 - 401

Fln protein: ITFVKLFLVMYCQSFTNEIEKECAQDHFFDVITNTIGLIVVILASTLYWWIDPTRAIVEQNMWA*

Protein Length: 66

Fln nts: CAATTACTTTTGTGAAGTTGTTCCTCGTAATGTATTGTCAAAGTTTTACTAATGAGATTGAGAAGGAATGTGCTCAAGATCATTTCTTTGATGTGATCACCAACACAATTGGTCTAATTGTTGTTATTCTTGCAAGTACTCTCTACTGGTGGATAGATCCTACTAGAGCAATTGTGGAACAAAACATGTGGGCTTAAAATCACTCTGGAAGCTATGACCAGCAACTGCAAGCGTTGGCATGGCGACAGGGCAATTCAATTACTTTGGCAATTAATCAATCAGTCTGTGGCTATATTTATATTTACCTATTATGCCTTCTTTTGTAAAGTCGGGAGGCGCAGCACGCTCCATTGACTGTGTACTGATTTCAATCTTGTAGCACTGGACATGGCCGGCCACCCAGCAGGCCATGGAGATATTTTGTAGTATTCTTGGTATT

Fln Alignment:

AllPineV4_rep_c98400___ITFVKLFLVMYCQSFTNEIEKECAQDHFFDVITNTIGLIVVILASTLYWWIDPTRAIV
A9NTR8_______________VTLVKLFLVLYCRSFTNEIVKAFAQDHFFDVITNSIGLIAAILASTLYWWIDPAGAIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain