SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69800

Length: 359 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene69800
ATGGGGGGCAACGATACATTGAAAGTTATTCCGGAACATTACAATCCACCCAAATTCAGCAGGCACTATGAGCAGCTCTTGTTCACAGGGCGGCATGGCACTCAAAAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCTGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTACCTCCAAGTATCATACAATGAACTGTGGAATCATATTCGTGGTCCTGAAATCCTCTTCC

Ace file of the UniGene sp_v2.0_unigene69800

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fumarylacetoacetase [Medicago truncatula]	-	-	8.0e-18	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	protein	-	-	1.76465e-31	80%

Source	InterPros	Term	Type	Identity
Sma3	Fumarylacetoacetase, C-terminal	IPR002529	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Fumarylacetoacetase	IPR005959	-	-
Sma3	Fumarylacetoacetase, C-terminal-related	IPR011234	-	-
Sma3	Fumarylacetoacetase, N-terminal	IPR015377	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABT0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 269 aas, your sequence is shorter than subject: 107 - 424

Fln protein: MGGNDTLKVIPEHYNPPKFSRHYEQLLFTGRHGTQKPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFLPPSIIQ*

Protein Length: 108

Fln nts: ATGGGGGGCAACGATACATTGAAAGTTATTCCGGAACATTACAATCCACCCAAATTCAGCAGGCACTATGAGCAGCTCTTGTTCACAGGGCGGCATGGCACTCAAAAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCaGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTACCTCCAAGTATCATACAATGAACTGTGGAATCATATTCGTGGTCCTGAAATCCTCTTCC

Fln Alignment:

AllPineV4_rep_c98059___KPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDF
D5ABT0_______________QPSLNAFMAMGKPAWKEARGTIQKLLSVDEPALRDNAELQKSALLPMSQVQLMLPAVIGDYTDF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain