SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69779

Length: 475 nt

UniGene Fasta

>sp_v2.0_unigene69779
TTAAAGGTGGATTTAACTCTAATCTTGTTATAGTCACAGCCCTAATTGACACATATGCCAACTGCGGCAGTTTAGAGGTTGCACACCAGTTGTTTGACCAGATATCTGAAAAAATGTGGTATCATGGAGTGCAATGATTGCCGCCTATGGAATGCATGGTCTTGGTGAGGAGGCAATTTCTCTTTTTCACCAAATGCAGATGACGGGCATACTGCCAAACCACATCACCTTTGTTTCTCTTTTGTCTGCATGCAGCCATTCAGGCCTGGTGCTTGAGGGCAGGCAATATTTCAATTCTATGGTTCAATATTATTGCATTGTTCCCAGGGTAGTGCATTATGCATGCATGGTTGATCTCCTTGGCCGAGCTGGGCATCTACATGAGGCATGGGACTTGATTAAACCATGCCTTTAGAACCAAGTGCGAGTGTGTGGGGTGCTTTGCTTGGAGCATGCAGAGTTCACTGCAATGTTG

Ace file of the UniGene sp_v2.0_unigene69779

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR domain containing protein	-	-	2.0e-06	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	2.68769e-40	76%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Hemimethylated DNA-binding domain	IPR011722	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 403 and 391, Distance to subject end: 187 aas, your sequence is shorter than subject: 158 - 795

Fln protein: KGGFNSNLVIVTALIDTYANCGSLEVAHQLFDQISxxxVVSWSAMIAAYGMHGLGEEAISLFHQMQMTGILPNHITFVSLLSACSHSGLVLEGRQYFNSMVQYYCIVPRVVHYACMVDLLGRAGHLHExxxxxxxMPLEPSASVWGALLGACRVHCNV

Protein Length: 159

Fln nts: TTAAAGGTGGATTTAACTCTAATCTTGTTATAGTCACAGCCCTAATTGACACATATGCCAACTGCGGCAGTTTAGAGGTTGCACACCAGTTGTTTGACCAGATATCTxxxxxxxxxGTGGTATCATGGAGTGCAATGATTGCCGCCTATGGAATGCATGGTCTTGGTGAGGAGGCAATTTCTCTTTTTCACCAAATGCAGATGACGGGCATACTGCCAAACCACATCACCTTTGTTTCTCTTTTGTCTGCATGCAGCCATTCAGGCCTGGTGCTTGAGGGCAGGCAATATTTCAATTCTATGGTTCAATATTATTGCATTGTTCCCAGGGTAGTGCATTATGCATGCATGGTTGATCTCCTTGGCCGAGCTGGGCATCTACATGAGGCxxxxxxxxxxxxxxxxxxCATGCCTTTAGAACCAAGTGCGAGTGTGTGGGGTGCTTTGCTTGGAGCATGCAGAGTTCACTGCAATGTTG

Fln Alignment:

AllPineV4_rep_c98021___KGGFNSNLVIVTALIDTYANCGSLEVAHQLFDQISEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKNVVSWSAMIAAYGMHGLGEEAISLFHQMQMTGILPNHITFVSLLSACSHSGLVLEGRQYFNSMVQYYCIVPRVVHYACMVDLLGRAGHLHEAWxxxxTMPLEPSASVWGALLGACRVHCNV
B8LQA8_______________RSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANxxxxNMSLEPDANVWGALLGACRIHCNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain