SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69689

Length: 497 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69689
CTCGAGTTGCTCAAATTTGTGAGGGAGGAAGAGGTGTCCGCCCTCTTAGAGAGCGTCACCAAGTGCTGCGCGGCGGGTGAGGCGGCGAACGTGAGCAAGCTGGTGTCCACCATGACAACGGATATCATATGCAGGATGGCCTTCGGCAAGAAGTACTGCGAGGAGGACCTGGACAGCAGAGGGTTCAAGGACATGATAAAGGAGGTCTTCTTTCTCAGCGGTGCCATTAATATTGGGGACTTCATTCCATGGTTGGAGTGGTTGGATCTGCAAGGCCTCCGCCGCCGACAGAAGAGCTGCCATAACACCTTTGATGCTTTCTTCGAGATGGTTATAGAGGAGCACATGAAGAAGAACAAGGACGATAGTTCTGATAAGAAGGATTTCGTGGATGTGATGTTGGGACTCATGGATAACAATGATATGGAGGTCAAGATCACTCGAGACAACATCAAGGCAGTCATCTTTGATATGCTGGGAGCGGGAACAGACACTTC

Ace file of the UniGene sp_v2.0_unigene69689 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 monooxygenase CYP736B n=3 Tax=Vitis RepID=C0KLZ0_9ROSI	-	-	1.0e-29	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	cytochrome p450 monooxygenase cyp736b	-	-	5.9241e-40	64%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQT4

Fln msg: Distance to subject end: 209 aas, your sequence is shorter than subject: 165 - 528

Fln protein: LELLKFVREEEVSALLESVTKCCAAGEAANVSKLVSTMTTDIICRMAFGKKYCEEDLDSRGFKDMIKEVFFLSGAINIGDFIPWLEWLDLQGLRRRQKSCHNTFDAFFEMVIEEHMKKNKDDSSDKKDFVDVMLGLMDNNDMEVKITRDNIKAVIFDMLGAGTDT

Protein Length: 166

Fln nts: CTCGAGTTGCTCAAATTTGTGAGGGAGGAAGAGGTGTCCGCCCTCTTAGAGAGCGTCACCAAGTGCTGCGCGGCGGGTGAGGCGGCGAACGTGAGCAAGCTGGTGTCCACCATGACAACGGATATCATATGCAGGATGGCCTTCGGCAAGAAGTACTGCGAGGAGGACCTGGACAGCAGAGGGTTCAAGGACATGATAAAGGAGGTCTTCTTTCTCAGCGGTGCCATTAATATTGGGGACTTCATTCCATGGTTGGAGTGGTTGGATCTGCAAGGCCTCCGCCGCCGACAGAAGAGCTGCCATAACACCTTTGATGCTTTCTTCGAGATGGTTATAGAGGAGCACATGAAGAAGAACAAGGACGATAGTTCTGATAAGAAGGATTTCGTGGATGTGATGTTGGGACTCATGGATAACAATGATATGGAGGTCAAGATCACTCGAGACAACATCAAGGCAGTCATCTTTGATATGCTGGGAGCGGGAACAGACACTTC

Fln Alignment:

AllPineV4_rep_c97838___LELLKFVREEEVSALLESVTKCCA--AGEAANVSKLVSTMTTDIICRMAFGKKYCEEDL-DSRGFKDMIKEVFFLSGAINIGDFIPWLEWLDLQGLRRRQKSCHNTFDAFFEMVIEEHMXXXXXXXXXXXXXXXVMLGLMDNNDMEVKITRDNIKAVIFDMLGAGTD
C0PQT4_______________LEALRFQREEEVSVMIHSLLEKCARVSNPVVDVSKTVLAVAVDIICRMAFGRKYSDEEAYDNRGFEEMIKEFGFLLGAFDIGDFIPYLGWMDLQGLGRRQKAISRTADAFYEKLIEEHL--AQKDVRETRDFVDVLLALSEHN-----IRRDNIKAILIDMLHAGSD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain