SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69546

Length: 397 nt

UniGene Fasta

>sp_v2.0_unigene69546
ATGGGCGATATTCGTTCTCAAATAGAACACGCTATCAGCACCGCCTCTGTCCATGTCGCCATCTTGTCTGACAACTACGCTGAATCAACTTGGTGCCTAGATGAGCTCGTACAAATGTTGCAGACAGGGGCTCCTAGTATTCCTGTCTTTTACGGTGTCCCGCCCAGTAAGGTTCGGTGGACGCTCGGTAAAAACTCGAAATATGCTCAAGACCTACAAAAACTGGCAGGGAAGAAAACTTCTGACCCTCAAACACAGGAAGAGAAGCCGCGTTATGACTCCAGCATCATTGAAAATTGGAGAAAGGCACTTTCTCGGATCGCAGACCTCAGCGGTTTTGAGCTGAAGGCGTGCAATATTGGCAAGGAGGAGGAGGTGGTGCTGCTAGAGAAGGTGG

Ace file of the UniGene sp_v2.0_unigene69546

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	5.0e-24	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	tir nbs lrr disease resistance protein	-	-	1.07535e-31	61%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 862 aas, your sequence is shorter than subject: 132 - 1071

Fln protein: MGDIRSQIEHAISTASVHVAILSDNYAESTWCLDELVQMLQTGAPSIPVFYGVPPSKVRWTLGKNSKYAQDLQKLAGKKTSDPQTQEEKPRYDSSIIENWRKALSRIADLSGFELKACNIGKEEEVVLLEKV

Protein Length: 133

Fln nts: ATGGGCGATATTCGTTCTCAAATAGAACACGCTATCAGCACCGCCTCTGTCCATGTCGCCATCTTGTCTGACAACTACGCTGAATCAACTTGGTGCCTAGATGAGCTCGTACAAATGTTGCAGACAGGGGCTCCTAGTATTCCTGTCTTTTACGGTGTCCCGCCCAGTAAGGTTCGGTGGACGCTCGGTAAAAACTCGAAATATGCTCAAGACCTACAAAAACTGGCAGGGAAGAAAACTTCTGACCCTCAAACACAGGAAGAGAAGCCGCGTTATGACTCCAGCATCATTGAAAATTGGAGAAAGGCACTTTCTCGGATCGCAGACCTCAGCGGTTTTGAGCTGAAGGCGTGCAATATTGGCAAGGAGGAGGAGGTGGTGCTGCTAGAGAAGGTGG

Fln Alignment:

AllPineV4_rep_c97466___IRSQIEHAISTASVHVAILSDNYAESTWCLDELVQMLQT---GAPSIPVFYGVPPSKVRWTLG---------------------KNSKYAQDLQKLAGKKTSDPQTQEEKPRYDSSIIENWRKALSRIADLSGFELKACN
C0PQE2_______________ITPQIKRAIRTASVHIAIFSKGYADSTWCLDELLDMLDTVKSGSAILPVFYNVQPSDLRWTRGGDTVYARVLSIFLCILLCTRGENGVYARALRKLQKKTTLDSVTNKKKPRHDSDTIEKWRKALSDVSLISGFELNACN

SSRs (tot: 1)

Start position	End position	Sequence	Length
365	376	AGG AGG AGG AGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain