SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69495

Length: 514 nt

UniGene Fasta

>sp_v2.0_unigene69495
CTTCTTCATATGGAATATTGAGGTGAGTTGCAAAGTCTATACCATTACATGTAATCAATTATTGAGAACTTTGCATAACAATGTCCCCTCCGATTGTGCAGGCAGCGTTACCATACAGTAATGGGGGTACCTGGATGGAGCAAAAGCGGGGAAGGGGCATTGGCAGACTTCATCCTTCAGATGTGGGGGAAGGTGTTCATACCGGTGTTCGGCCACTTCTCATAAGAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCGCAAAGTGTCTGTGTGTTCCTCCCGGGACTTATGGAAACAAACAAGTGTGCCCTTGCTACAACAACTGGAAGACTCAGCAAGGCGGCCCCAAGTGCCCCTGAGCATTTGATTAATCCATTAGTTTCATAATCTATAATATGAAGCATCATTGCCATTATTCTAGATAAGCAGACAATGTTTGTCTAAAATATATATATAGGTATGGATCAGCAGATCTGTTTTGAGTGAGTGAGTACGTTCTTCTGCGTGAGAGA

Ace file of the UniGene sp_v2.0_unigene69495

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative gibberellin-regulated protein [Arabidopsis thaliana] gb\|AAS47605.1\| At1g74670 [Arabidopsis thaliana] gb\|AEE35620.1\| putative gibberellin-regulated protein [Arabidopsis thaliana]	-	-	3.0e-31	79%
FL-Next	tr=Gasa5 like protein; Pinus pinaster (Maritime pine).	-	-	0.0	83%
Blast2go	gibberellin induced protein	-	-	1.4013e-45	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	1.4013e-45	88%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	1.4013e-45	88%
Blast2go	response to fructose stimulus	GO:0009750	Biological Process	1.4013e-45	88%
Blast2go	response to karrikin	GO:0080167	Biological Process	1.4013e-45	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL6

Fln msg: Overlapping hits, possible frame ERROR between 188 and 143, Unexpected STOP codon in 5 prime region,

Fln protein: MSTPIVQAALPYSNGGTWMExxxxxxxxxxxxxxxxxRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP*

Protein Length: 95

Fln nts: CTTCTTCATATGGAATATTGAGGTGAGTTGCAAAGTCTATACCATTACATGTAATCAATTATTGAGAACTTTGCATAACA_-_ATGTCCaCTCCGATTGTGCAGGCAGCGTTACCATACAGTAATGGGGGTACCTGGATGGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGTGTTCATACCGGTGTTCGGCCACTTCTCATAAGAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCGCAAAGTGTCTGTGTGTTCCTCCCGGGACTTATGGAAACAAACAAGTGTGCCCTTGCTACAACAACTGGAAGACTCAGCAAGGCGGCCCCAAGTGCCCCTGAGCATTTGATTAATCCATTAGTTTCATAATCTATAATATGAAGCATCATTGCCATTATTCTAGATAAGCAGACAATGTTTGTCTAAAATATATATATAGGTATGGATCAGCAGATCTGTTTTGAGTGAGTGAGTACGTTCTTCTGCGTGAGAGA

Fln Alignment:

AllPineV4_rep_c97329___VQAALPYSNGGTWMEQxxxxxxxxxxxxxxxGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP
F4MKL6_______________IEAALPYSNGGTWMEQxxxxxxxxxxxxxxxGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP

SSRs (tot: 1)

Start position	End position	Sequence	Length
482	494	TGAG TGAG TGAG T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain