SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69479

Length: 314 nt

UniGene Fasta

>sp_v2.0_unigene69479
GAAAAGCTTTGTACATAAAATTTTGGTGGCCGACTCATCAGCCAGGTGAAATGCACAGAGTGTTCTCATTCTTCCAATAAATTTGATCCTTTTTTAGATCTGAGCCTGCAAATCAATCGAGCAGACTCTTTGGTGAAAGCACTATCCCATTTCACTGCAGTGGAGCAATTAGATGGGGGGAGAAAAGGTATCAATGTGAACAATGCAAAGTAAAAGTTAGGGGCTCTCAAACAGCTGAAAATTGACAAAGCTCCATATATCCTTGCAATTCATCTTAAGCGATTCAGCACAGGTGGATCTGGAGGAAAATAGAT

Ace file of the UniGene sp_v2.0_unigene69479

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Oryza sativa Japonica Group RepID=Q5SMN5_ORYSJ	-	-	4.0e-23	62%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	ubiquitin carboxyl-terminal hydrolase 23-like	-	-	6.41254e-27	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	6.41254e-27	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Fumarate reductase/succinate dehydrogenase, FAD-binding site	IPR003952	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FPS4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 531 aas, your sequence is shorter than subject: 104 - 859

Fln protein: EKLCT*NFGGRLISQVKCTECSHSSNKFDPFLDLSLQINRADSLVKALSHFTAVEQLDGGRKGINVNNAK*KLGALKQLKIDKAPYILAIHLKRFSTGGSGGK*

Protein Length: 105

Fln nts: GAAAAGCTTTGTACATAAAATTTTGGTGGCCGACTCATCAGCCAGGTGAAATGCACAGAGTGTTCTCATTCTTCCAATAAATTTGATCCTTTTTTAGATCTGAGCCTGCAAATCAATCGAGCAGACTCTTTGGTGAAAGCACTATCCCATTTCACTGCAGTGGAGCAATTAGATGGGGGGAGAAAAGGTATCAATGTGAACAATGCAAAGTAAAAGTTAGGGGCTCTCAAACAGCTGAAAATTGACAAAGCTCCATATATCCTTGCAATTCATCTTAAGCGATTCAGCACAGGTGGATCTGGAGGAAAATAGAT

Fln Alignment:

AllPineV4_rep_c97276___FGGRLISQVKCTECSHSSNKFDPFLDLSLQINRADSLVKALSHFTAVEQLDGGRKGINVNNXXXXXXXXXXXXIDKAPYILAIHLKRF
Q9FPS4_______________FGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKADSLQRALSRFTAVELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain