SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69452

Length: 338 nt

UniGene Fasta

>sp_v2.0_unigene69452
GGTTCACCGGGCGGCGGGAAAGAGCTCGCCAGCGGGGAGTCGTGGACGGTTCAGGTCAACCGGAGTTCAATTACTGGACGGTTTTGGGGGCGCACCGGGTGTTCCTTTGACAGCACCGGCCAAGGCAGCTGCAAAACTGGGGACTGTGGAGGTCTACTAAGCTGTCAAGGCCCGGAAAACCCCCTGCGACGATGGTCGAGTACGATTACCAGTTTTTCGAGGGTTATAGGATTTCTTATGACATCTCTCTCGTCAATGGATTCAACTTGCCAGTGTCGATCACACCCTCCGACGATTTTGCATTCAGTCACCTGCAGCAGCAATATAAGTGACATCTG

Ace file of the UniGene sp_v2.0_unigene69452

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thaumatin-like protein L3 n=1 Tax=Pinus monticola RepID=D3IZ07_PINMO	-	-	5.0e-24	72%
FL-Next	tr=Thaumatin-like protein L3; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	72%
Blast2go	thaumatin-like protein	-	-	4.74501e-24	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D3IZ07

Fln msg: Separated hits, possible frame ERROR between 171 and 174, Unexpected STOP codon at 3' end. Distance to subject end: 82 aas, your sequence is shorter than subject: 111 - 234

Fln protein: GSPGGGKELASGESWTVQVNRSSITGRFWGRTGCSFDSTGQGSCKTGDCGGLLSCQxxGKPPATMVEYDYQFFEGYRISYDISLVNGFNLPVSITPSDDFAFSHLQQQYK*

Protein Length: 112

Fln nts: GGTTCACCGGGCGGCGGGAAAGAGCTCGCCAGCGGGGAGTCGTGGACGGTTCAGGTCAACCGGAGTTCAATTACTGGACGGTTTTGGGGGCGCACCGGGTGTTCCTTTGACAGCACCGGCCAAGGCAGCTGCAAAACTGGGGACTGTGGAGGTCTACTAAGCTGTCAAGGxxxCGGAAAACCCCCTGCGACGATGGTCGAGTACGATTACCAGTTTTTCGAGGGTTATAGGATTTCTTATGACATCTCTCTCGTCAATGGATTCAACTTGCCAGTGTCGATCACACCCTCCGACGATTTTGCATTCAGTCACCTGCAGCAGCAATATAAGTGACATCTG

Fln Alignment:

AllPineV4_rep_c97218___GSPG-GGKELASGESWTVQVNRSSITGRFWGRTGCSFDSTGQGSCKTGDCGGLLSCQGxGKPPATMVEYDYQFFEGYRISYDISLVNGFNLPVSITPSD
D3IZ07_______________GTPGVGGKQLERGQSWTVQFPAGT-TGRFWGRTGCSFDGSGKGSCKTGDCGGLLNCQGxGSVPATLAEFAVNQFQNLDF-YDVSLVDGFNLPMSIIPSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain