SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69239

Length: 453 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene69239
ATGGGAGAGCTCCCCGACTTCAGTTTCAGCCTTGTTATATCTGAGATTTGTGGAAGTAGCCAGCCAATAAGAAAAATATTTTATCCTTCTAAGTTCTGAGACATGGATATGAAGAAAGCAATCCACGCGTGCATTCTTCTGGTTATGGTGTTCGGATTGTTGGATCTGGTAGTTTGCAGTGTGGAGGATGAGATCAACGGATTTTCACTCGGTCAGCCTCAGACATTAAATAAGGACCGTCATCTGCTTGCAATAAACTGCAGCTCGTGCCAGTGTGTTCCCCCAGGGACATATGGCAACAAGAACGCGTGCCCTTGCTATCGGGATATGAAGAATGCCAAGGGCAAACCCAAATGCCCTTGAATGAGCCGCATCGTACAGTTCAGATTGCTGAATATGAGCTAAATAAGTCGATCTGACAATACTATCGAAATGTTCTGAGTGGACTATAAC

Ace file of the UniGene sp_v2.0_unigene69239

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein [Medicago truncatula] gb\|ACJ86188.1\| unknown [Medicago truncatula]	-	-	3.0e-12	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	snakin-1	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP73

Fln msg: your sequence is shorter than subject: 87 - 111

Fln protein: MDMKKAIHACILLVMVFGLLDLVVCSVEDEINGFSLGQPQTLNKDRHLLAINCSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP*

Protein Length: 88

Fln nts: ATGGGAGAGCTCCCCGACTTCAGTTTCAGCCTTGTTATATCTGAGATTTGTGGAAGTAGCCAGCCAATAAGAAAAATATTTTATCCTTCTAAGTTCTGAGAC_-_ATGGATATGAAGAAAGCAATCCACGCGTGCATTCTTCTGGTTATGGTGTTCGGATTGTTGGATCTGGTAGTTTGCAGTGTGGAGGATGAGATCAACGGATTTTCACTCGGTCAGCCTCAGACATTAAATAAGGACCGTCATCTGCTTGCAATAAACTGCAGCTCGTGCCAGTGTGTTCCCCCAGGGACATATGGCAACAAGAACGCGTGCCCTTGCTATCGGGATATGAAGAATGCCAAGGGCAAACCCAAATGCCCTTGA___ATGAGCCGCATCGTACAGTTCAGATTGCTGAATATGAGCTAAATAAGTCGATCTGACAATACTATCGAAATGTTCTGAGTGGACTATAAC

Fln Alignment:

AllPineV4_rep_c96686___MDMKKAIHACILLVMVFGLLDLVVCSVEDEINGFSLGQPQTLNKDRHLLAIN-------------------------CSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP
A9NP73_______________MEIKKAVHACILLVMLFGLLNLVVCSVEDEINGFSLGQPQTLHKDRHLLALNCGSACGKRCALASVKDRCLKYCGICCSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain