SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69216

Length: 242 nt

UniGene Fasta

>sp_v2.0_unigene69216
TCCAAAGATAACAGATTTCGGGCTAGCAAGACTTTTCCCTGAGGACGAAACTCACGTCAGCACAAGAGTCGCTGGAACCTTCGGGTATATGGCACCAGAGTATGCTATGCGGGGACAATTATCTGCAAAAGCTGATGTCTATAGCTTTGGCGTTCTTGTCCTGGAAGTTATTGTTGGAAGAAAAAATATTGATTACAATTTGTCACCTGAAATGCAGATCCTTTCGGAATGGGTATGGAGAT

Ace file of the UniGene sp_v2.0_unigene69216

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to putative receptor protein kinase from A. thaliana [Hordeum vulgare subsp. vulgare]	-	-	6.0e-25	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	serine threonine-protein kinase	-	-	7.63921e-36	79%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 80 - 290

Fln protein: PKITDFGLARLFPEDETHVSTRVAGTFGYMAPEYAMRGQLSAKADVYSFGVLVLEVIVGRKNIDYNLSPEMQILSEWVWR

Protein Length: 81

Fln nts: TCCAAAGATAACAGATTTCGGGCTAGCAAGACTTTTCCCTGAGGACGAAACTCACGTCAGCACAAGAGTCGCTGGAACCTTCGGGTATATGGCACCAGAGTATGCTATGCGGGGACAATTATCTGCAAAAGCTGATGTCTATAGCTTTGGCGTTCTTGTCCTGGAAGTTATTGTTGGAAGAAAAAATATTGATTACAATTTGTCACCTGAAATGCAGATCCTTTCGGAATGGGTATGGAGAT

Fln Alignment:

AllPineV4_rep_c96643___PKITDFGLARLFPEDETHVSTRVAGTFGYMAPEYAMRGQLSAKADVYSFGVLVLEVIVGRKNIDYNLSPEMQILSEWVWR
A9NQB9_______________PKIADFGLARLFPDDETHVHTRVAGTYGYMAPEYAMLGQLSVKADVYSFGVVLLEIVSGRRNTDIRLPQEQQILLEWGWR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain