SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69007

Length: 477 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene69007
CGTCGTGACCTTGGCTGTCACTCAGGTGTTCAGCTTTGGGGTTGTTGCGCTTGAAATAGCCTCTGGAAGACCGGCTACCTACGCCGTCGGGCAACTGTATAAAGATTCTTGCTGGCCGTTGGTTGAATGGGTGTGGGATTTGTATGGCAAACACTGTTTGCTGGATGCGGCAGACAATAGATTAAATGGAGGATTCGATGCCAGAGAAATGATACGGCTCATGGTTGTTGGATTATGGTGCTGCAATCCTGATTTTAAACAGAGGCCCAAAATGATACAAGTAGTTCAGACATTGAAGTTTGAAGCTGTGTTGCCTCGCCTCCCATCCATGATGCCCCGATTCATTGTTCTCCAACCGGAATTGCATTCAGATCGATATTATTCGTCGGAATTTCTTGATTCAGTGCGCGAACCTGCGACAGAGCCCTGTTTGACAGCGCACCAAATGTGGAAGAGCTGTTTGTCCCGGTAACTTTC

Ace file of the UniGene sp_v2.0_unigene69007

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative lectin-like protein kinase [Oryza sativa Japonica Group]	-	-	1.0e-24	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	l-type lectin-domain containing receptor kinase -like	-	-	1.28404e-28	63%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 24 aas, your sequence is shorter than subject: 157 - 704

Fln protein: VVTLAVTQVFSFGVVALEIASGRPATYAVGQLYKDSCWPLVEWVWDLYGKHCLLDAADNRLNGGFDAREMIRLMVVGLWCCNPDFKQRPKMIQVVQTLKFEAVLPRLPSMMPRFIVLQPELHSDRYYSSEFLDSVREPATEPCLTAHQMWKSCLSR*

Protein Length: 158

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGTTCAGCTTTGGGGTTGTTGCGCTTGAAATAGCCTCTGGAAGACCGGCTACCTACGCCGTCGGGCAACTGTATAAAGATTCTTGCTGGCCGTTGGTTGAATGGGTGTGGGATTTGTATGGCAAACACTGTTTGCTGGATGCGGCAGACAATAGATTAAATGGAGGATTCGATGCCAGAGAAATGATACGGCTCATGGTTGTTGGATTATGGTGCTGCAATCCTGATTTTAAACAGAGGCCCAAAATGATACAAGTAGTTCAGACATTGAAGTTTGAAGCTGTGTTGCCTCGCCTCCCATCCATGATGCCCCGATTCATTGTTCTCCAACCGGAATTGCATTCAGATCGATATTATTCGTCGGAATTTCTTGATTCAGTGCGCGAACCTGCGACAGAGCCCTGTTTGACAGCGCACCAAATGTGGAAGAGCTGTTTGTCCCGGTAACTTTC

Fln Alignment:

AllPineV4_rep_c96149___TQVFSFGVVALEIASG-RPATYAVGQLYKDSCWPLVEWVWDLYGKHCLLDAADNRLNGGFDAREMIRLMVVGLWCCNPDFKQRPKMIQVVQTLKFEAVLPRL
B8LLJ6_______________SDVFSFGVLLLEVTCGKRPAD----PLNDAKRMVLVEWVWKLHTEGRLVDASDPNLGKAYDMCQIEKVLKLGLLCCNPEPQSRLGMRHVCQILEGEAPLPDL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
35		33		66	0.997467
36			33	66	0.997467
38		33	66		0.997476
40			66	33	0.997476
42	33			66	0.997464
43		33		66	0.997464
44		33	66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain