SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68967

Length: 653 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene68967 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucyl-tRNA synthetase [Arabidopsis thaliana] gb\|AAD36946.1\|AF069441_6 putative leucyl tRNA synthetase [Arabidopsis thaliana] emb\|CAB77903.1\| putative leucyl tRNA synthetase [Arabidopsis thaliana] gb\|AAL84999.1\| AT4g04350/T19B17_7 [Arabidopsis thaliana] g	-	-	72%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	76%
Blast2go	leucyl-trna synthetase	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ia	IPR002300	-	-
Sma3	Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial	IPR002302	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding	IPR013155	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, core domain	IPR018165	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
256		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain