SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68637

Length: 237 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68637
CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAGTGTTTCCAGAGCTCTTTTGAAGGAAAGGTTCAAAGCGTTTAATATGCAATTTGAAGAGCTTCACCAACGGCAAACTCAATGGACTGTTCCCGACAATGAGCTGCGTGAGTCTCTACGTTTGGCAGTGGCTGAGGTTCTCTTACCAGCTTATCGTCAATTTCTTAAACGCTTTGGATCTTTGTTAGACAAC

Ace file of the UniGene sp_v2.0_unigene68637

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exocyst subunit exo70 family protein A1 n=4 Tax=Brassicaceae RepID=Q9LZD3_ARATH	-	-	3.0e-23	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	exocyst subunit exo70 family protein a1	-	-	4.3142e-34	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	4.3142e-34	90%
Blast2go	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	4.3142e-34	90%
Blast2go	cytosol	GO:0005829	Cellular Component	4.3142e-34	90%
Blast2go	exocyst	GO:0000145	Cellular Component	4.3142e-34	90%
Blast2go	extracellular vesicular exosome	GO:0070062	Cellular Component	4.3142e-34	90%
Blast2go	nucleus	GO:0005634	Cellular Component	4.3142e-34	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.3142e-34	90%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Exo70 exocyst complex subunit	IPR004140	-	-
Sma3		IPR015706	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 33 aas, your sequence is shorter than subject: 79 - 647

Fln protein: RRDLGCHSS*PWLSLSVSRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDN

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAGTGTTTCCAGAGCTCTTTTGAAGGAAAGGTTCAAAGCGTTTAATATGCAATTTGAAGAGCTTCACCAACGGCAAACTCAATGGACTGTTCCCGACAATGAGCTGCGTGAGTCTCTACGTTTGGCAGTGGCTGAGGTTCTCTTACCAGCTTATCGTCAATTTCTTAAACGCTTTGGATCTTTGTTAGACAAC

Fln Alignment:

AllPineV4_rep_c95224___SLSVSRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDN
A9NWM1_______________SSSVSRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
24	33		66		0.997476
25	33			66	0.997476
26	33	66			0.997476
32	33	66			0.997471
33			33	66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain