SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68553

Length: 491 nt

UniGene Fasta

>sp_v2.0_unigene68553
AAACTATGTACTGTTGTCAAACATATATGCTACGGCTGGAAGGTGGGATGAAGTGATGAAGGTGAGAGCAGTGATTAAAGACACTAAATTGACGTCGTGTCCTGGCTGCACTGGATCGAGTTCAAGAACAGAGTCCATTCATTTGTTGTTGGAGACAGATCACACAAACAATCAGAACAGATATATGCAATGGTGGATTTATTGGCTGGGAAGATGAAAGATGCAGGGTATATGCCTGACAGGAGTTTTGTGCTTCATAATATTGAGGAAGAAGAGAAGGAAGATGTTCTTTCTACCCACAGTGAGAAGCTGGCCATCGCATTTGGGCTTATTAGCACAAGCCCTGGGACACCTATACAGATTACCAAGAACCTCCGTGTATGTGGTGACTGCCATATGGCCATTAAATTATGTCCAAGATTGTCGAACGAGAACTTATTGTGAGGGATACAATTCGCTTCCATCATTTTAGAGATGGATTGTGTTCCTGT

Ace file of the UniGene sp_v2.0_unigene68553

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	pentatricopeptide repeat protein	-	-	8.40779e-45	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Separated hits, possible frame ERROR between 106 and 112, and possible frame ERROR between 408 and 429, STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 164 - 514

Fln protein: NYVLLSNIYATAGRWDEVMKVRAVIKDTKLTSCPxxxWIEFKNRVHSFVVGDRSHKQSEQIYAMVDLLAGKMKDAGYMPDRSFVLHNIEEEEKEDVLSTHSEKLAIAFGLISTSPGTPIQITKNLRVCGDCHMAIxxxxxxxxRELIVRDTIRFHHFRDGLCSC

Protein Length: 165

Fln nts: AAACTATGTACTGTTGTCAAACATATATGCTACGGCTGGAAGGTGGGATGAAGTGATGAAGGTGAGAGCAGTGATTAAAGACACTAAATTGACGTCGTGTCCTGGxxxxxxCTGGATCGAGTTCAAGAACAGAGTCCATTCATTTGTTGTTGGAGACAGATCACACAAACAATCAGAACAGATATATGCAATGGTGGATTTATTGGCTGGGAAGATGAAAGATGCAGGGTATATGCCTGACAGGAGTTTTGTGCTTCATAATATTGAGGAAGAAGAGAAGGAAGATGTTCTTTCTACCCACAGTGAGAAGCTGGCCATCGCATTTGGGCTTATTAGCACAAGCCCTGGGACACCTATACAGATTACCAAGAACCTCCGTGTATGTGGTGACTGCCATATGGCCATTAxxxxxxxxxxxxxxxxxxxxxAACGAGAACTTATTGTGAGGGATACAATTCGCTTCCATCATTTTAGAGATGGATTGTGTTCCTGT

Fln Alignment:

AllPineV4_rep_c95040___YVLLSNIYATAGRWDEVMKVRAVIKDTKLTSCPGxxWIEFKNRVHSFVVGDRSHKQSEQIYAMVDLLAGKMKDAGYMPDRSFVLHNIEEEEKEDVLSTHSEKLAIAFGLISTSPGTPIQITKNLRVCGDCHMAIKxxxxxxxRELIVRDTIRFHHFRDGLCSC
D5AD86_______________YVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGxxWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKxxxxxxxRKIVVRDANRFHHFKDGRCSC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
170	66			33	0.997454
172		66		33	0.997454
173	66		33		0.997457
174	66		33		0.997454
175			33	66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain