SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68460

Length: 216 nt

UniGene Fasta

>sp_v2.0_unigene68460
GCAGGCTTCCTATTGAAACTATGCAGATTCTTGAAAATAAAATCAGGTCATTGGAACAATTCTTAAGGTCAAGGAGAAACCAGAGAAGAGGGCTATATGGTCGTGTTGTTGGTCTAGGAGACATGGCTGGCTCAATTTTGTATAGTGCAAATGGAAACTTTGGGATTAAGGACCAGGGCGCTGGTTCGCAGTGAGTGACAGGCCACGTGAGACTGC

Ace file of the UniGene sp_v2.0_unigene68460

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F10B6.25 n=2 Tax=Arabidopsis thaliana RepID=Q9LQU6_ARATH	-	-	4.0e-05	44%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%
Blast2go	nuclear pore complex protein nup155-like	-	-	1.55262e-08	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoporin, Nup155-like	IPR004870	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HFD8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 726 aas, your sequence is shorter than subject: 64 - 1496

Fln protein: RLPIETMQILENKIRSLEQFLRSRRNQRRGLYGRVVGLGDMAGSILYSANGNFGIKDQGAGSQ*

Protein Length: 65

Fln nts: GCAGGCTTCCTATTGAAACTATGCAGATTCTTGAAAATAAAATCAGGTCATTGGAACAATTCTTAAGGTCAAGGAGAAACCAGAGAAGAGGGCTATATGGTCGTGTTGTTGGTCTAGGAGACATGGCTGGCTCAATTTTGTATAGTGCAAATGGAAACTTTGGGATTAAGGACCAGGGCGCTGGTTCGCAGTGAGTGACAGGCCACGTGAGACTGC

Fln Alignment:

AllPineV4_rep_c94798___RLPIETMQILENKIRSLEQFLRSRRNQXXXXXXXXXXXXDMAGSILYSANGNFGIKD
F6HFD8_______________RLSSGAMQVLENKIRALEKFLRSRRNQRRGLYGCVAGLGDLTGSILYGTGSDLGAGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain