SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68383

Length: 329 nt

UniGene Fasta

>sp_v2.0_unigene68383
ATTCCAAATGTGGTAGCGTATACATTGCACGCCAAGTATTTGATGAAATGCCTCATAGAGATGTAGTCTCCTGGACAGCTATGATTGTAGGGTATGGACTAAATGGGTATGGCAAGGAAGCTCTTGCACTCTTTGACCAAATGCAAGAGGCAGGTATGCAGCCAAACCATATCACATTTATGGGTGTTTTGTCTGCTTGCAGCCATTCTGGCCTTTTGGCTGAAGGCTGGTTGTATTTTGAGCGCATGAACAGAGATTATAACCTTTCACCTAATGTAGAGCATTATGCATGTATGGTTGACCTTCTTGGCCGTGCTGGTCACTTGCAA

Ace file of the UniGene sp_v2.0_unigene68383

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide repeat protein [Gossypium hirsutum]	-	-	5.0e-33	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	9.02457e-40	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Nuclear control of ATP synthase 2	IPR013946	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 185 aas, your sequence is shorter than subject: 109 - 795

Fln protein: SKCGSVYIARQVFDEMPHRDVVSWTAMIVGYGLNGYGKEALALFDQMQEAGMQPNHITFMGVLSACSHSGLLAEGWLYFERMNRDYNLSPNVEHYACMVDLLGRAGHLQ

Protein Length: 110

Fln nts: ATTCCAAATGTGGTAGCGTATACATTGCACGCCAAGTATTTGATGAAATGCCTCATAGAGATGTAGTCTCCTGGACAGCTATGATTGTAGGGTATGGACTAAATGGGTATGGCAAGGAAGCTCTTGCACTCTTTGACCAAATGCAAGAGGCAGGTATGCAGCCAAACCATATCACATTTATGGGTGTTTTGTCTGCTTGCAGCCATTCTGGCCTTTTGGCTGAAGGCTGGTTGTATTTTGAGCGCATGAACAGAGATTATAACCTTTCACCTAATGTAGAGCATTATGCATGTATGGTTGACCTTCTTGGCCGTGCTGGTCACTTGCAA

Fln Alignment:

AllPineV4_rep_c94610___SKCGSVYIARQVFDEMPHRDVVSWTAMIVGYGLNGYGKEALALFDQMQEAGMQPNHITFMGVLSACSHSGLLAEGWLYFERMNRDYNLSPNVEHYACMVDLLGRAGHL
B8LQA8_______________AKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain